Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03290 643 / 0 IDH-V isocitrate dehydrogenase V (.1) AT3G09810 602 / 0 IDH-VI isocitrate dehydrogenase VI (.1) AT4G35260 343 / 6e-117 IDH-I, IDH1 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) AT2G17130 328 / 6e-111 IDH-II, IDH2 isocitrate dehydrogenase II, isocitrate dehydrogenase subunit 2 (.1.2) AT4G35650 328 / 1e-110 IDH-III isocitrate dehydrogenase III (.1) AT1G32480 179 / 1e-54 IDH-IV isocitrate dehydrogenase IV (.1) AT1G31180 153 / 1e-42 IPMDH1, ATIMD3 ISOPROPYLMALATE DEHYDROGENASE 1, ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 3, isopropylmalate dehydrogenase 3 (.1) AT5G14200 152 / 2e-42 ATIMD1 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 1, isopropylmalate dehydrogenase 1 (.1.2.3) AT1G80560 148 / 6e-41 ATIMD2 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 2, isopropylmalate dehydrogenase 2 (.1) AT5G14590 47 / 1e-05 Isocitrate/isopropylmalate dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002221 [exp] 723 / 0 AT5G03290 648 / 0.0 isocitrate dehydrogenase V (.1) Lus10013806 [exp] 699 / 0 AT5G03290 642 / 0.0 isocitrate dehydrogenase V (.1) Lus10026519 [exp] 691 / 0 AT5G03290 642 / 0.0 isocitrate dehydrogenase V (.1) Lus10028374 [exp] 337 / 3e-114 AT4G35260 659 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Lus10041824 [exp] 337 / 6e-114 AT4G35260 656 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Lus10014436 [exp] 322 / 2e-108 AT4G35260 620 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Lus10023937 [exp] 302 / 2e-101 AT4G35260 549 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Lus10030344 [exp] 155 / 2e-42 AT1G80560 655 / 0.0 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 2, isopropylmalate dehydrogenase 2 (.1) Lus10041077 [exp] 145 / 9e-40 AT1G80560 658 / 0.0 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 2, isopropylmalate dehydrogenase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G091200 [exp] 655 / 0 AT5G03290 642 / 0.0 isocitrate dehydrogenase V (.1) Potri.006G126700 [exp] 651 / 0 AT5G03290 627 / 0.0 isocitrate dehydrogenase V (.1) Potri.004G204300 [exp] 338 / 1e-114 AT4G35260 611 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Potri.005G099600 [exp] 335 / 2e-113 AT4G35260 613 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Potri.009G165200 [exp] 334 / 3e-113 AT4G35260 621 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Potri.007G064000 [exp] 327 / 2e-110 AT4G35260 595 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Potri.001G185600 [exp] 152 / 3e-42 AT1G80560 639 / 0.0 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 2, isopropylmalate dehydrogenase 2 (.1) Potri.001G347800 [exp] 46 / 3e-05 AT5G14590 771 / 0.0 Isocitrate/isopropylmalate dehydrogenase family protein (.1) Potri.017G144541 [exp] 43 / 0.0003 AT1G65930 779 / 0.0 cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1) Potri.004G074900 [exp] 42 / 0.0004 AT1G65930 781 / 0.0 cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0270 [flax] [poplar] Iso_DH PF00180 [flax] [poplar] Iso_dh Isocitrate/isopropylmalate dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10023192 pacid=23170326 polypeptide=Lus10023192 locus=Lus10023192.g ID=Lus10023192.BGIv1.0 annot-version=v1.0 ATGGCGTTCAACCAGTTCCTCAGTCGCGCTCTTAGAACCCGCTCCGACCAGATCCTCTCCGCTTCCTCCGCCTTCTCTTCCGCCAGGGCTTTCTCCTCCG CTCCCATCACCGCCACCCTCTTCCCCGGCGACGGTATCGGCCCCGAGATCGCGGAGTCCGTCAAACAGGTGTTCAGGGAAGCCGAGGTGCCAATTCAATG GGAAGAACATTATGTTGGTACAGAAATAGATCCCAGAACCCAGAGCTTTCTAACATGGGAAAGTTTAGAGTCAGTAAGACGAAACCGAGTGGGCTTGAAA GGGCCAATGGCTACTCCAATTGGGAAAGGCCATCGTTCTTTGAACCTCACTCTCAGGAAAGAACTTAATTTGTATGCCAATGTCAGGCCTTGCTACAGTC TTCCTGGTTACAAAACTCGATATGATGATGTGAATCTTGTCACCATTCGTGAGAACACTGAAGGAGAATACAGTGGACTTGAGCACCAAGTGGTTAGAGG AGTGGTCGAAAGTCTCAAGATCATTACTCGCCAGGCCAGTTTGAGGGTAGCTGAGTATGCCTTTCATTATGCAAAAGCTCATGGAAGAGAGAGAGTGTCT GCTATACATAAAGCTAACATCATGCAAAAAACTGATGGCCTTTTCCTTAAGTGCTGTCGTGAGGTTGCTGAGAAGTATCCTGAGATAACATATGAAGAGG TTGTCATCGACAACTGTTGTATGATGCTTGTGAAGAATCCAGCACTATTTGATGTATTGGTTATGCCTAATCTCTACGGTGACATCATTAGTGATCTTTG TGCTGGTTTAATTGGTGGTCTGGGGTTGACACCAAGTTGCAATATTGGCGAGGGAGGAATAGCTCTTGCTGAGGCTGTCCATGGTTCTGCTCCTGACATT GCTGGGAAGAACTTGGCGAATCCAACTGCTCTGCTACTGAGTGGTGTGTCGATGTTGCGGCATCTGGAGTTCCATGATAAGGCAGACAGGATTCAGAAGG CCGTACTGGACACAATCGCGGAAGGAAAGTTCCGAACCGCAGATCTCGGAGGAAGCTCTACAACGAGTGACTTCACAAAGGCCATCTGCGATCACCTTTA A
AA sequence Show only first row Show all	>Lus10023192 pacid=23170326 polypeptide=Lus10023192 locus=Lus10023192.g ID=Lus10023192.BGIv1.0 annot-version=v1.0 MAFNQFLSRALRTRSDQILSASSAFSSARAFSSAPITATLFPGDGIGPEIAESVKQVFREAEVPIQWEEHYVGTEIDPRTQSFLTWESLESVRRNRVGLK GPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLVTIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKAHGRERVS AIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPALFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDI AGKNLANPTALLLSGVSMLRHLEFHDKADRIQKAVLDTIAEGKFRTADLGGSSTTSDFTKAICDHL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03290		IDH-V	isocitrate dehydrogenase V (.1...		Lus10023192 [exp]	0	1
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Lus10004938 [exp]	2.2	0.9610
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Lus10040885 [exp]	2.4	0.9542
AT5G40810			Cytochrome C1 family (.1.2)		Lus10022327 [exp]	5.8	0.9109
AT5G13430			Ubiquinol-cytochrome C reducta...		Lus10035118 [exp]	6.6	0.9458
AT1G59900		AT-E1 ALPHA, AT...	pyruvate dehydrogenase complex...		Lus10013295 [exp]	6.9	0.9285
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10028977 [exp]	7.5	0.9225
AT5G08680			ATP synthase alpha/beta family...		Lus10034631 [exp]	7.9	0.9512
AT4G10040		CYTC-2	cytochrome c-2 (.1)		Lus10028892 [exp]	8.5	0.9331
AT5G51830			pfkB-like carbohydrate kinase ...		Lus10027401 [exp]	9.5	0.9443
AT5G08300			Succinyl-CoA ligase, alpha sub...		Lus10040992 [exp]	10.5	0.9454

Compare expression of checked genes

Lus10023192 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.