Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013809 [exp] 46 / 5e-06 AT2G37025 97 / 3e-24 TRF-like 8 (.1.2) Lus10026522 [exp] 48 / 6e-06 AT2G37025 97 / 2e-21 TRF-like 8 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G126300 [exp] 42 / 0.0006 AT2G37025 120 / 2e-29 TRF-like 8 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023198 pacid=23170435 polypeptide=Lus10023198 locus=Lus10023198.g ID=Lus10023198.BGIv1.0 annot-version=v1.0 ATGAAGAGAGAGGAGCTGGAAATCACGATGTGGCATTTTAGTAAAATCCAGATGGAAAATACAACACGATTAAAACTCACAGTCACAGTCACAGTCACCG CCCTTGTTTGGAAGCGGGCAACTGCTGCTGACGTGGACAACCTGGAAAAGAAACCCGATATCGTCGATCAGGATTGCTTCCGCACAGACGAAACAGAAAT TGCGTCAGAGTTAGAGGAACATATTCGATTCCTCCCAGCAAGCTTCCATTCCGTTCATCTCTGCTCGCTTGCTTCTGCTTCTTCTCCTTCTCTAGCTGAC GTGAGTGCCGAATTAGGACCAGTGAAACAGAGGAAAAGCCCCAAATACTGTGCCCTTGGAGATATGGGGTCTTCGCAGGTCAAAGTTGATGATTTCTCAA CGCTGGATGAAGCACTTGAGATTGAGTTCTTGCTTTATGAGCCTAAAAGAGAGGATTACTCTTTGAATGGTATCTTTACATTTGATACTGATAGTAACAA CATTACTGTCAACACCTCATCATCTGGAGTTCTGCTGCATAATGAGGATTTTTCCCTCTCGGATGCCACAGTGGACAAGAATGTTGTCAAAGCGAACCCA AGTCCAGAATCTCAGTCTTTTGGACTGTTTACTCCCAACAATATTGATGCTCATGATTTTGGGCCAGCAGGGTCATCATCATCGACAAAGAAAGCTGTTC TGCAATCCAAGTTGGGATATCATGAGGATTATAACAAGACTAACAGGAGGCAGGGAAATAAGGCGGTAATGTGGACTCAGACTGAGGTGTCTGAATTGGT TGAAGGTGTTGCTAAGCTTGGAACAGAGGAATGGAGTAACATAAAGATGGTGCTATCAGATTCTCATCGCGCACCTAAACATCTCAGGGTTGGACCGGAG ATGAAGCAAAGGATGCGTCCTAAGTTGCCTAAGTACTTGGTGGAACGGATTTTGGAAGTAGGCACAACACATCACGGTTTCGTAAGGTAG
AA sequence Show only first row Show all	>Lus10023198 pacid=23170435 polypeptide=Lus10023198 locus=Lus10023198.g ID=Lus10023198.BGIv1.0 annot-version=v1.0 MKREELEITMWHFSKIQMENTTRLKLTVTVTVTALVWKRATAADVDNLEKKPDIVDQDCFRTDETEIASELEEHIRFLPASFHSVHLCSLASASSPSLAD VSAELGPVKQRKSPKYCALGDMGSSQVKVDDFSTLDEALEIEFLLYEPKREDYSLNGIFTFDTDSNNITVNTSSSGVLLHNEDFSLSDATVDKNVVKANP SPESQSFGLFTPNNIDAHDFGPAGSSSSTKKAVLQSKLGYHEDYNKTNRRQGNKAVMWTQTEVSELVEGVAKLGTEEWSNIKMVLSDSHRAPKHLRVGPE MKQRMRPKLPKYLVERILEVGTTHHGFVR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10023198 [exp]	0	1
AT5G27410			D-aminoacid aminotransferase-l...		Lus10035342 [exp]	16.7	0.7283
AT1G19980			cytomatrix protein-related (.1...		Lus10017215 [exp]	22.6	0.7189
AT3G55960			Haloacid dehalogenase-like hyd...		Lus10040202 [exp]	32.8	0.6839
AT2G27110	FAR1_related	FRS3	FAR1-related sequence 3 (.1.2....		Lus10026767 [exp]	72.4	0.6843
AT3G45290		ATMLO3, MLO3	MILDEW RESISTANCE LOCUS O 3, S...		Lus10012241 [exp]	80.5	0.6436
AT5G67240		SDN3	small RNA degrading nuclease 3...		Lus10011505 [exp]	113.1	0.6640
AT5G41610		ATCHX18	cation/H+ exchanger 18, ARABID...		Lus10017541 [exp]	221.6	0.6347
AT2G31260		ATAPG9, APG9	autophagy 9 (APG9) (.1)		Lus10000709 [exp]	258.8	0.6224

Compare expression of checked genes

Lus10023198 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.