Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37010 984 / 0 ATNAP12 non-intrinsic ABC protein 12 (.1) AT5G60740 885 / 0 ABCG28 ATP-binding cassette G28, ABC transporter family protein (.1) AT1G53390 795 / 0 ABCG24 ATP-binding cassette G24, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G31770 194 / 3e-52 ABCG14 ATP-binding cassette G14, ATP-binding cassette 14 (.1) AT3G25620 182 / 1e-49 ABCG21 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) AT3G21090 185 / 5e-49 ABCG15 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) AT5G06530 182 / 7e-48 AtABCG22, ABCG22 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) AT4G27420 178 / 4e-47 ABCG9 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) AT1G17840 179 / 6e-47 AtABCG11, WBC11, DSO, ABCG11 ,COF1, ATWBC11 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) AT1G51500 178 / 9e-47 AtABCG12, WBC12, ABCG12, D3, CER5, ATWBC12 ECERIFERUM 5, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX 12, ATP-binding cassette G12, ABC-2 type transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023020 [exp] 1402 / 0 AT2G37010 1484 / 0.0 non-intrinsic ABC protein 12 (.1) Lus10041325 [exp] 905 / 0 AT5G60740 1548 / 0.0 ATP-binding cassette G28, ABC transporter family protein (.1) Lus10021448 [exp] 903 / 0 AT5G60740 1559 / 0.0 ATP-binding cassette G28, ABC transporter family protein (.1) Lus10016115 [exp] 899 / 0 AT5G60740 1639 / 0.0 ATP-binding cassette G28, ABC transporter family protein (.1) Lus10038714 [exp] 798 / 0 AT1G53390 1310 / 0.0 ATP-binding cassette G24, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037981 [exp] 768 / 0 AT1G53390 1330 / 0.0 ATP-binding cassette G24, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10033315 [exp] 197 / 2e-55 AT1G31770 551 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10034775 [exp] 200 / 2e-54 AT1G31770 1028 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10035692 [exp] 196 / 4e-53 AT1G31770 1001 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G126100 [exp] 1021 / 0 AT2G37010 1377 / 0.0 non-intrinsic ABC protein 12 (.1) Potri.003G169000 [exp] 917 / 0 AT5G60740 1643 / 0.0 ATP-binding cassette G28, ABC transporter family protein (.1) Potri.001G058900 [exp] 896 / 0 AT5G60740 1672 / 0.0 ATP-binding cassette G28, ABC transporter family protein (.1) Potri.010G225200 [exp] 889 / 0 AT1G53390 1393 / 0.0 ATP-binding cassette G24, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G236500 [exp] 202 / 5e-55 AT1G31770 970 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Potri.003G046800 [exp] 200 / 2e-54 AT1G31770 945 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Potri.009G051300 [exp] 187 / 1e-49 AT3G21090 943 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.001G255800 [exp] 184 / 1e-48 AT3G21090 1038 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.011G123200 [exp] 181 / 5e-48 AT4G27420 737 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Potri.016G056600 [exp] 180 / 2e-47 AT3G21090 744 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10023199 pacid=23170346 polypeptide=Lus10023199 locus=Lus10023199.g ID=Lus10023199.BGIv1.0 annot-version=v1.0 ATGGATACCAAATACCACCTGGCAAAACAAACCACACATGTGGAAGTGCAGATTCATGGGTGGCTGTCGAAGACGGGGAAGAGGTTTTTTGTTCACCTGG TTCATATTGTCCAACCACCACCATCACTATTCCTTGCAGTAGTGGCTTGCTTTGAGTTGACGAGCTGTCCTCAGGGAACAGCAAATCAGAACCTTCATGC TTATGGCATCATTCTTATTGTAATGTTGACTACAACGCTACTGATAATCGTCAACTGCTCGGACCAAGCACTGTCGACAAGGGAGAGACGAGCCGCGAAA AGGAGAGAAGATGCAGCAAGACATGCCAAAGAAACAGCACAGGCACGTCAGAGGTGGAAAGCAGCACAAGACCTTACCAAGATCCGCCAGCCTGGGTCCT TAGAATCTCAGCTTTCCACTACTCTGTCTCGCAACAAGTCCACCAAACAACAACAACCTCAAACCAACAACCTCACCAAGATGGTACAGTCAATCGATGA AGATCCGAACACTCATGATGGCTTCCATGTGGAAATTGGTGACAAAAATATTAAAAAACAAGCTCCTAAAGGGAAAAACCTCCACACTCGTAGCCAAATA TTCAAGTATGCATACGGCGAGCTTGAGAAGGAGAAAGAAGCCATGGAGCAAGACCATGGCAATCTCACATTTTCAGGCGTTATTTCTATGGCCGCTGAGA CTGATGTTAGGAGTAGGCCTGTCATTGAGGTTGCTTTCAAGGATTTGACTCTGACTTTAAAGGGTAAAAACAAACATTTGCTGAGGTGTGTTAGTGGGAA GTTACTGCCTGGTAGAGTTTCTGCTGTTATGGGGCCTTCTGGTGCTGGAAAGACCACTTTTCTGTCTGCTCTACTTGGGAAGACAACTGGTTGTACGAGG ACTGGTTCTATTCTTGTCAATGGCAAGAATAACTCTATCCTTTGTTACAAGAAGATAGTTGGGTTTGTACCTCAAGATGATACTGTCCATGGAAATTTGA CTGTGGAAGAGAATCTCCGGTTCAACGCCAGATGCAGATTAGCAGCAAACATGTCAAAGGCGGATAAAGTACTAGTGATCGAAAGAGTGATCGAGTCATT AGGACTGCAGGCGGTGCGAGACTCATTGGTCGGAACAGTGGAGAAGCGAGGAATATCCGGGGGACAGAGGAAACGTGTGAATGTAGGAATAGAAATGGTG ATGGAGCCTTCACTTTTGATTCTGGATGAGCCCACAACTGGCTTGGATAGCTCTTCTTCACAGTTGCTTCTTAAGGCCTTACGCCGTGAGGCTCTCGAGG GTGTTAACATCTGCATGGTCCTTCACCAGCCAAGCTTCGCAATGTTCAAAATGTTTGACGATTTCATACTGTTGGCAAAAGGAGGGCTTACTGTGTACCA TGGACCAACAAAGAAAGTGGAAGAGTACTTTTCGAACATAGGAATCACAGTGCCAGAAAGAGTGACCCCTCCAGATCATTACATTGACATTTTGGAAGGC ATAGCCAAACCTAGTAACAACATAACTCACGAGGAACTCCCAGTGAGATGGATGCTTCATAATGGATACACAGTCCCTCCTGATATGTTACACATTTGTG ATTCAATGAATAAGGACAATGCTACTTCGAAAGTCGACCTTGGCAACGAAACTAGTAGTGATGATAAGGATATCCCACATCGTGCGGAAGAACAACACAA CTCTTTCTTTGGGGAATTATTCCAGGATGTACGCTGTCTTTTGGAGACACAATTAGATCAACTACATCTTAACTTTCGTAGGTCTAAGGATTTATCCAGT AGAACAACTCCTACCATACTGAGGCAGTACAGATATTACCTTGGAAGGGTCACCAAACAAAGACTAAGAGAAGCTAGACTACAAGCAGCTGATCTGTTAA TTCTGTTACTTGCTGGAGCATGCTTAGGAACACTTGCCAAAGTGGATGATGCTACATTTGGCTCAACTGGATATACTTACACTGTCATTGCTGTTTCATT GCTAAGCATGATATCAGCATTAAGATCTTTCACTCTAGACAAACTGCATTACATGAGAGAAAGTGCATGTGGAATCAGTAGTCTAGCTTATTTCATGTCC AAAGATACGCTGGACCTCTTCAACAACATCGTCAAACCTTTGGTCTACTTGTCTATGTTCTACTTCTTCAACAGCCCTAGATCAACCTTTCAAGACAACT ATGTCGTCTTGCTTTCTCTGGTCTATTGTGTCACTGGATTGGCTTACATCTTTGCCATCTATCTCGGACCCAGTCCAGCACAGCTGTGTTCAGTTCTTGT TCCTGTCGTCTTGACACTGGTTGCAACACAAGAGCATCAAACTGGATTGGTGAAGCGACTAGGACCACTATGCTTCCCAAAGTGGGCTATGGAAGCTTTC AGTATAGCAAATGCTGAAAGATACTCTGGTGTGTGGCTACTAACTCGATGTGCATCATTAAAGCGAAGCAACTACGATTTGGGGCACTGGAGTTTGTCTT TGTCACTTCTCATTCTCACAGGGATAATCACTCGCTTTATAGCCTACTTTTTACTGATTACATTCCAGAAGAAATGA
AA sequence Show only first row Show all	>Lus10023199 pacid=23170346 polypeptide=Lus10023199 locus=Lus10023199.g ID=Lus10023199.BGIv1.0 annot-version=v1.0 MDTKYHLAKQTTHVEVQIHGWLSKTGKRFFVHLVHIVQPPPSLFLAVVACFELTSCPQGTANQNLHAYGIILIVMLTTTLLIIVNCSDQALSTRERRAAK RREDAARHAKETAQARQRWKAAQDLTKIRQPGSLESQLSTTLSRNKSTKQQQPQTNNLTKMVQSIDEDPNTHDGFHVEIGDKNIKKQAPKGKNLHTRSQI FKYAYGELEKEKEAMEQDHGNLTFSGVISMAAETDVRSRPVIEVAFKDLTLTLKGKNKHLLRCVSGKLLPGRVSAVMGPSGAGKTTFLSALLGKTTGCTR TGSILVNGKNNSILCYKKIVGFVPQDDTVHGNLTVEENLRFNARCRLAANMSKADKVLVIERVIESLGLQAVRDSLVGTVEKRGISGGQRKRVNVGIEMV MEPSLLILDEPTTGLDSSSSQLLLKALRREALEGVNICMVLHQPSFAMFKMFDDFILLAKGGLTVYHGPTKKVEEYFSNIGITVPERVTPPDHYIDILEG IAKPSNNITHEELPVRWMLHNGYTVPPDMLHICDSMNKDNATSKVDLGNETSSDDKDIPHRAEEQHNSFFGELFQDVRCLLETQLDQLHLNFRRSKDLSS RTTPTILRQYRYYLGRVTKQRLREARLQAADLLILLLAGACLGTLAKVDDATFGSTGYTYTVIAVSLLSMISALRSFTLDKLHYMRESACGISSLAYFMS KDTLDLFNNIVKPLVYLSMFYFFNSPRSTFQDNYVVLLSLVYCVTGLAYIFAIYLGPSPAQLCSVLVPVVLTLVATQEHQTGLVKRLGPLCFPKWAMEAF SIANAERYSGVWLLTRCASLKRSNYDLGHWSLSLSLLILTGIITRFIAYFLLITFQKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37010		ATNAP12	non-intrinsic ABC protein 12 (...		Lus10023199 [exp]	0	1
AT4G37330		CYP81D4	"cytochrome P450, family 81, s...		Lus10024817 [exp]	2.8	0.9631
					Lus10026928 [exp]	4.0	0.9631
AT4G34760			SAUR-like auxin-responsive pro...		Lus10026296 [exp]	4.2	0.8674
AT2G46150			Late embryogenesis abundant (L...		Lus10027177 [exp]	4.9	0.9631
AT2G23600		ATMES2, ACL, AT...	ARABIDOPSIS THALIANA METHYL ES...		Lus10012854 [exp]	5.7	0.9631
AT3G15570			Phototropic-responsive NPH3 fa...		Lus10030390 [exp]	5.8	0.8682
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10013728 [exp]	6.3	0.9631
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Lus10005762 [exp]	7.3	0.9548
AT3G07680			emp24/gp25L/p24 family/GOLD fa...		Lus10006360 [exp]	7.9	0.9495
AT1G74100		SOT16, ATSOT16,...	CORONATINE INDUCED-7, ARABIDOP...		Lus10018047 [exp]	8.0	0.9368

Compare expression of checked genes

Lus10023199 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.