Plant FIBer expression Database

Lus10023200 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10023200 pacid=23170323 polypeptide=Lus10023200 locus=Lus10023200.g ID=Lus10023200.BGIv1.0 annot-version=v1.0
ATGACTGGAAACACGGCAGGAATGGGAAGCAACAAGATGAAGGCGGTTCTGGCGATGGCATTCACAGAAAGCCTTCAATTTCGAGACATTGACAGGGCAA
CCAGGGGCGACCCGCCCAGCTACATAATTGGCTCGTGGGGTTGCCGAGCTCTAGTTCAGCTCCAGCAACGCTTTGACCCATCTCGCTGGACAGTCTTTTC
GAACAGGGGTCAAAGGTTGAAGGAGTGGAATTGTGAAGGGTTTGGAATTAAGACCTTCGATTTTGGGGCAAAGAAAGAAAGAAATGGCGGGGAGAAACGA
GTGCCTAGTTTGAAGGGAAACTTACAAGAATCCGCCCCATCCTCTGAAGATCTGCAATGTCTCTACCAAAAACTAAGGCACGGTGATCCCACACGTCTCC
AGAACCACCTAATCCTTATCCACCCAACTACAGCACGGTACCGACCAGGGAGTGGTGACCCTGGCATAAATGATGAGGAGGAAACCAGCTGCACGGGAAG
CGCATTTACCACCAGCACCATCATCATCACCATCTGTCACCTTGCCGGCAGGGCTAGGAGTATTAATCTGAAATCAACCACCATATCTTGGATAGACCTG
CCGCCCGTGTCCCCGCAGTACAAAATCAAGGTACCCTCATCCACAAAAGCGGTTCAAAGATCCCCAAATCCGACCCAGCGAACTGTAGACGTCAATCATC
CCCACTCCCCTCTAATGGCATTAAATCTTACTCTGAGAACTGCATTGGGAAGGAGGATCCCCGTAGTGGAAGACCAGGTGTTGGAGAAAGTCGAACGAAA
ACCACCTTCTCCGATTCAAGCACCAACAAGCTCCTTCCGGTCTCCCCCAGATAGGCAAAAAACGAGCCCACCTCCAAGAAAACCACCAAACTCACCTCAC
CATGGATTGCCTAATCACCCAGCCCACGACCCCCACCCACCTATCCAGCTCTAG
AA sequence
>Lus10023200 pacid=23170323 polypeptide=Lus10023200 locus=Lus10023200.g ID=Lus10023200.BGIv1.0 annot-version=v1.0
MTGNTAGMGSNKMKAVLAMAFTESLQFRDIDRATRGDPPSYIIGSWGCRALVQLQQRFDPSRWTVFSNRGQRLKEWNCEGFGIKTFDFGAKKERNGGEKR
VPSLKGNLQESAPSSEDLQCLYQKLRHGDPTRLQNHLILIHPTTARYRPGSGDPGINDEEETSCTGSAFTTSTIIITICHLAGRARSINLKSTTISWIDL
PPVSPQYKIKVPSSTKAVQRSPNPTQRTVDVNHPHSPLMALNLTLRTALGRRIPVVEDQVLEKVERKPPSPIQAPTSSFRSPPDRQKTSPPPRKPPNSPH
HGLPNHPAHDPHPPIQL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10023200
[exp]
0 1
AT4G10320 tRNA synthetase class I (I, L,... Lus10025306
[exp]
4.0 0.7704
AT5G23960 ATTPS21 terpene synthase 21 (.1.2) Lus10040043
[exp]
4.4 0.8204
AT1G12740 CYP87A2 "cytochrome P450, family 87, s... Lus10027434
[exp]
10.2 0.7691
Lus10040877
[exp]
16.4 0.6160
AT5G44785 OSB3 organellar single-stranded DNA... Lus10002722
[exp]
16.9 0.7602
AT3G07680 emp24/gp25L/p24 family/GOLD fa... Lus10006360
[exp]
17.9 0.7553
AT1G74100 SOT16, ATSOT16,... CORONATINE INDUCED-7, ARABIDOP... Lus10018047
[exp]
18.0 0.7552
Lus10026928
[exp]
18.9 0.7543
AT2G46150 Late embryogenesis abundant (L... Lus10027177
[exp]
20.2 0.7543
AT5G36000 unknown protein Lus10012627
[exp]
20.4 0.7210

Lus10023200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.