Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30350 380 / 2e-118 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT5G57710 368 / 2e-113 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT3G52490 150 / 3e-37 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT5G57130 142 / 2e-34 Clp amino terminal domain-containing protein (.1) AT2G29970 140 / 6e-34 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT4G29920 134 / 7e-32 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT1G07200 130 / 9e-31 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G40130 119 / 3e-27 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G15450 75 / 2e-13 AtCLPB3, APG6, CLPB3, CLPB-P CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) AT1G74310 71 / 2e-12 HOT1, ATHSP101 heat shock protein 101 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008902 [exp] 1178 / 0 AT5G57710 392 / 3e-124 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10019984 [exp] 751 / 0 AT5G57710 912 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015511 [exp] 704 / 0 AT5G57710 899 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10021291 [exp] 148 / 2e-36 AT3G52490 690 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10028849 [exp] 140 / 4e-34 AT3G52490 498 / 5e-165 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10008970 [exp] 138 / 3e-33 AT3G52490 460 / 1e-147 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10028281 [exp] 127 / 7e-30 AT1G07200 407 / 3e-127 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10036183 [exp] 125 / 3e-29 AT2G29970 566 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038320 [exp] 122 / 3e-28 AT2G29970 696 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G097300 [exp] 545 / 3e-180 AT5G57710 998 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G175200 [exp] 534 / 5e-176 AT5G57710 913 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.018G140900 [exp] 164 / 1e-41 AT5G57130 751 / 0.0 Clp amino terminal domain-containing protein (.1) Potri.008G017600 [exp] 155 / 7e-39 AT3G52490 635 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G073800 [exp] 155 / 1e-38 AT4G29920 693 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.010G241600 [exp] 151 / 1e-37 AT3G52490 641 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.016G071800 [exp] 149 / 5e-37 AT3G52490 785 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G204500 [exp] 149 / 6e-37 AT3G52490 852 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G252500 [exp] 116 / 2e-26 AT2G29970 668 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G069100 [exp] 114 / 1e-25 AT2G29970 610 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023201 pacid=23181057 polypeptide=Lus10023201 locus=Lus10023201.g ID=Lus10023201.BGIv1.0 annot-version=v1.0 ATGAGAGCAGGAATCAGCTTCGCGATCCAACAAACCCTCACCCCAGAGGCATCCACCGTACTAACAAACTCAATCGCCGAAGCCGGCCGCCGGAGCCACA ACCAAACCACCCCACTCCACGTCGCCGCCACCCTCCTCTCCTCCCCTTCCGGCTACCTCCGGAAAGCCTGCGTCAAGTCCCACCCGAATTCCTCCCACCC TCTGCAGTGCCGAGCTCTGGAGCTCTGCTTCAGCGTCGCTCTAGAAAGACTACCCACCACTGCCGCCGCCGACGACGACCCGGGACCCGAACCGCCGATG TCCAACGCGTTGGCGGCGGCTCTGAAGAGGGCGCAGGCGAATCAGAGAAAAGGATGCCCCGAGCATCCTCAGCAGTCGTTGATGACCGTGAAAGTTGAGC TTGAGCAGCTGATTATATCCATCCTGGACGACCCGAGTGTCAGCCGGGTCATGAGAGAAGCTAAGTTCTCCAGTCCGGCTGTTAAGGCCACCATTGAAAA GTCTTTGAGCTCTAGAGTTTCCGGGTCGGATTTGGGTCCGGGTCGGATCGCGAATGAGGGAGTCAAACGGGTCGTTGACGTTGCTAACAGAGCTCCTCCT CTTCCTGGATTGTTTCCAAGGATTGGGACGACTGGATTCCTTGGAAACTCTCTTGAGTCTATGTCACCATTGAAGGCCTTTCCAACGGTGGCAATTGCCC CAGTACTGAATCGGAATCCTGCAGGAAAAACGGACTTCTGTCCTCAGTGCAAGCATAACTATGAGCAGGACCTGGCGAAACACGTTACGAAACCAAAGGA TGCTAACTCGGAACCAGCTCAGCAGCAGTCTTTGCCACAATGGTTGAAGAATGCCACTACTAAACAAGCCGGTGTCGAACCTTTGGATCAGTCTTTGACC AAGGATCAAGAACTAATCCAGCAGCAGAAGACTATGGCACTGCAAAAGAAATGGCACGACACATGCTTGCGTCTTCATCCCGGCCATCATCGATCGAATC GGGGTCCTGACAGGCTAACTCTCTCAATGCCGAGCTTGTACAATCAAAACAACAACACCAACCTGGTACCTTGCGTTCCCAAGATTAACTTGACTGGAGG ATATCTCACTCTGGAAACAAAAGCAAATCCGTCACCTAAACAAAGTCCGAAACTCTTGACAAGTCCACCTCGAAGCCCTGTGAGAACAGAGCTTGTTCTT GGGAATCATCCTCCTAAAGTGGCTGCTGAAAGCATTCCTTCCTCCAAGTTCCAGATAAGCAAGCTGCTTGACAAATTGGATGCTGATGAGTTCAAGAAGT TGGTAAAGGGTCTTATGGAGAAAGTATGGTGGCAGCAAGATGCAGCATCGGCAGTTGCTACAGTGATCACACAGTGCAAGCTAGGCAGTGGGAAAAGGAG AGGTAGTAATAATGTATGGCTTTTGTTCACAGGTCCTGACAGGATTGGTAAAAGGAAGATGGCAGTTGCTCTTTCCGAGCAGGTTCGCCACTCGAATCCG GTCACGGTTCGTCTCGGTTTTTTGGGTCGAGAAGATGGCTGCTTCGGACGTGGTAAGACCGTGGTGGACCGAATCGTTGAGGCGGTTCGGAGGAACCCGT TTTCGGTGGTGGTGCTCGAGGACATCGACGAAGCAGATATGGTGGTGAAGGGGACTATAAAGAGAGCGATGGAAAGGGGTCGTCTTTCCGACTCGCATGG CCGAGAAATCGGCCTTGGAAATGTGATTTTCGTACTCACTGCTGAGGGTCTAGAGTTCGAATCCAATAACCATGCGCTTGATGAGAAGAAGCTTGCGAGC TTTGTAGGCGGAGGTTGGCAGCTGAGGCTGTCTGTTAGTGGGAAGACAGCCAAGCGTACAGCCAGTTGTTGCAACTGGCTCGACGAAAGGCCTAAGAAGG ACACAAGATCCGGACTATCGTTCGACCTAAATGAAGAAGCCGGATCTCAAAATTCGAGCGATTTGACCGTTGATCATGAAGATGAACAATTCCTCTCTAG TAGATTACTAACACCAACAACTATTAGTACTAGTGCCACCTCATCATCATCATCGCTGCCTTTGGAGCTACTGGATTTGTTGGACGACAGCATCACCTTC AAACCGGTCGATTTCGGTGCAATGAGAAGGAACATTTCAAGTTCGATCATCGACAGAGCTTCGTCAATTATCGGTGATGGTAACAACTTAGAGCTTGAAC CGGATGCGTTGGGAAAAATTGCAGGTGGGTTGTGCTTAGGCTACATTGGTTTGGAAGAATGGACTGAGAAAGCATTGGTGCCTAGCTTGAGGCAAGTAAG GATGAAGCTTGAACCGGGTCGATCCATGGTTATCCGGTTGGAACCCGATCGTGATTCGGAGAGTCGGAGCCCTGGGGATTGGTTGCCAAGTAGTGTTAGA GTCATGGTTGATGGGAGGTGA
AA sequence Show only first row Show all	>Lus10023201 pacid=23181057 polypeptide=Lus10023201 locus=Lus10023201.g ID=Lus10023201.BGIv1.0 annot-version=v1.0 MRAGISFAIQQTLTPEASTVLTNSIAEAGRRSHNQTTPLHVAATLLSSPSGYLRKACVKSHPNSSHPLQCRALELCFSVALERLPTTAAADDDPGPEPPM SNALAAALKRAQANQRKGCPEHPQQSLMTVKVELEQLIISILDDPSVSRVMREAKFSSPAVKATIEKSLSSRVSGSDLGPGRIANEGVKRVVDVANRAPP LPGLFPRIGTTGFLGNSLESMSPLKAFPTVAIAPVLNRNPAGKTDFCPQCKHNYEQDLAKHVTKPKDANSEPAQQQSLPQWLKNATTKQAGVEPLDQSLT KDQELIQQQKTMALQKKWHDTCLRLHPGHHRSNRGPDRLTLSMPSLYNQNNNTNLVPCVPKINLTGGYLTLETKANPSPKQSPKLLTSPPRSPVRTELVL GNHPPKVAAESIPSSKFQISKLLDKLDADEFKKLVKGLMEKVWWQQDAASAVATVITQCKLGSGKRRGSNNVWLLFTGPDRIGKRKMAVALSEQVRHSNP VTVRLGFLGREDGCFGRGKTVVDRIVEAVRRNPFSVVVLEDIDEADMVVKGTIKRAMERGRLSDSHGREIGLGNVIFVLTAEGLEFESNNHALDEKKLAS FVGGGWQLRLSVSGKTAKRTASCCNWLDERPKKDTRSGLSFDLNEEAGSQNSSDLTVDHEDEQFLSSRLLTPTTISTSATSSSSSLPLELLDLLDDSITF KPVDFGAMRRNISSSIIDRASSIIGDGNNLELEPDALGKIAGGLCLGYIGLEEWTEKALVPSLRQVRMKLEPGRSMVIRLEPDRDSESRSPGDWLPSSVR VMVDGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57710			Double Clp-N motif-containing ...		Lus10023201 [exp]	0	1
AT1G04770			Tetratricopeptide repeat (TPR)...		Lus10000753 [exp]	10.9	0.8079
AT3G50810			Uncharacterised protein family...		Lus10016784 [exp]	12.3	0.8476
AT2G06210		VIP6, ELF8	VERNALIZATION INDEPENDENCE 6, ...		Lus10000472 [exp]	15.5	0.8353
AT1G30090			Galactose oxidase/kelch repeat...		Lus10042824 [exp]	18.8	0.8454
AT5G01960			RING/U-box superfamily protein...		Lus10011027 [exp]	21.1	0.8117
AT5G42000			ORMDL family protein (.1.2)		Lus10033219 [exp]	22.9	0.8359
AT3G60380			unknown protein		Lus10028193 [exp]	27.2	0.7521
AT4G04610		1-Apr, PRH19, A...	PAPS REDUCTASE HOMOLOG 19, APS...		Lus10020040 [exp]	29.3	0.7819
AT4G25300			2-oxoglutarate (2OG) and Fe(II...		Lus10032574 [exp]	35.2	0.8263
AT1G10500		ATCPISCA	chloroplast-localized ISCA-lik...		Lus10020827 [exp]	35.2	0.8052

Compare expression of checked genes

Lus10023201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.