Plant FIBer expression Database

Lus10023202 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G18710 806 / 0 SCY1 SECY homolog 1 (.1)
AT2G31530 142 / 5e-36 EMB2289, SCY2 SECY HOMOLOG 2, EMBRYO DEFECTIVE 2289, SecY protein transport family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008901
[exp]
804 / 0 AT2G18710 382 / 1e-127 SECY homolog 1 (.1)
Lus10014663
[exp]
117 / 2e-27 AT2G31530 705 / 0.0 SECY HOMOLOG 2, EMBRYO DEFECTIVE 2289, SecY protein transport family protein (.1)
Lus10000654
[exp]
54 / 2e-07 AT1G03180 287 / 1e-94 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G097500
[exp]
815 / 0 AT2G18710 781 / 0.0 SECY homolog 1 (.1)
Potri.006G175300
[exp]
809 / 0 AT2G18710 739 / 0.0 SECY homolog 1 (.1)
Potri.002G053900
[exp]
137 / 1e-34 AT2G31530 789 / 0.0 SECY HOMOLOG 2, EMBRYO DEFECTIVE 2289, SecY protein transport family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00344 SecY SecY translocase
Representative CDS sequence
>Lus10023202 pacid=23180987 polypeptide=Lus10023202 locus=Lus10023202.g ID=Lus10023202.BGIv1.0 annot-version=v1.0
ATGGTGATAACAGTAGGACAAGCTACGCCTACTGTATCTTTCAAACTTTCTCCTTTCAATCCGACGCCATCCCTTACAAATTTCTCCCGGCGGCGACCTA
TTTTCTCCTACCGGCGAAAACCCATCAAACTAACCGCCGTCGCTGCTACTACTACTTCCAAACAATGGGGCAATACGCTCAACTCCAAGAGCTATGAAGT
TGCAGCTTTCGATCCTTTGGGTATTAATTTGAATGATGAGTCTGGTTTAGCTGCAGCTTGGGAAAGTTTTCTGTCTTTGTTGTCGCCTGCTTTTGAGTTG
AGTAATGCCAGAAAGGATAGGCCTCTACCTCGAGGAGTTGCTGCTGCAATTGAGGACAGTTCAATAGACTTTGGGGACTTTTTCAAGGGACCATTGCCAG
GGAAGTTCCTCAAGCTTCTAGGGTTCTTAGCTCTTTCTCGCCTGGGAATCTATATACCTCTTGGTGGAGTTAACAGGGAGGCCTTCGTCGGGAACTTGGA
CCAGAATAGCTTGTTGAGCACTTTGGATTCCTTCTCTGGTGGAGGCATTGGTAGGCTTGGGATATGTTCACTTGGTATAGTTCCTTTCATCAATGCACAG
ATTGTGTTTCAGCTCCTTGCTCAGATCAACCCCAAGTTGCAAGATCTTCAGAAGAGAGAAGGGGAAGCTGGTCGAAAGAAGATCCTCGAGTATACTCGAT
ATGCTTCCGTTGGCTTTGCCATAGTGCAGGCAATTGGTCAAGTCTTTTACCTTCGTCCCTATGTGAAGGACTTCAGTTCAGAGTGGGTTATATCGACCGT
GACATTGCTGACACTCGGTTCGGTGTTCTTAACGTACCTCGGTGAACGAATCTCGGATTTGAAGCTTGGTAATGGAACATCTCTTTTGATATTTACAAGC
ATTATCTCCTACTTGCCAGCTTCTTTTGGTAGGACTGCAGCTCAGGCATTCCAGGATGGGAACTACAGTGGTCTTGTCACTAGTCTTGTCTCATTCATAG
TACTTGTCTTTGGCATTGTGTATGTTCAGGAAGCAGAGAGAAAGATACCACTGAATTATGCCTCAAGATATAACAGCAGTAGTGGAAGTGGCCTTCAAAA
GTCTGCTTATCTTCCATTCAAGGTGAATAGTTCTGGAGTGATGCCGATCATATTTTCTACATCGTCGTTGGCTCTCCCTGGCACGCTAGCACGGTTTACT
GGGATATCCGCCCTGAAAAACGCTGCATTAGCTTTGAACCCTGGAGGTTCATTCTATCTCCCTACAAATATTCTACTAATAGCCTTCTTCAACTATTACT
ACACCTTCCTGCAATTGGACCCTGATGATGTCAGTGAACAATTGAAGCGCCAAGGGGCTTCCATCCCGCTGGTTCGGCCCGGTAAAAGCACTGCTGCTTA
TCTCAAGACAGTTTTGAGCCGGATATCGGTTTTGGGTTCGGCTTTTTTGGCGATCCTGGCAGCCGGTCCGGCTGTGGTTGAACAGGTGACCCACTTGACA
GCATTCAGAGGGTTTGCGGGCACATCTGTGCTTATCCTTGTTGGGTGTGCAACTGATACAGCTAGAAAAGTTGAAGCAGAGATAATTTCCCAGAAGTACA
AGAATATCGAGTTCTATGATGTTGACAAGTATGGGAAATGA
AA sequence
>Lus10023202 pacid=23180987 polypeptide=Lus10023202 locus=Lus10023202.g ID=Lus10023202.BGIv1.0 annot-version=v1.0
MVITVGQATPTVSFKLSPFNPTPSLTNFSRRRPIFSYRRKPIKLTAVAATTTSKQWGNTLNSKSYEVAAFDPLGINLNDESGLAAAWESFLSLLSPAFEL
SNARKDRPLPRGVAAAIEDSSIDFGDFFKGPLPGKFLKLLGFLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQ
IVFQLLAQINPKLQDLQKREGEAGRKKILEYTRYASVGFAIVQAIGQVFYLRPYVKDFSSEWVISTVTLLTLGSVFLTYLGERISDLKLGNGTSLLIFTS
IISYLPASFGRTAAQAFQDGNYSGLVTSLVSFIVLVFGIVYVQEAERKIPLNYASRYNSSSGSGLQKSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFT
GISALKNAALALNPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAYLKTVLSRISVLGSAFLAILAAGPAVVEQVTHLT
AFRGFAGTSVLILVGCATDTARKVEAEIISQKYKNIEFYDVDKYGK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G18710 SCY1 SECY homolog 1 (.1) Lus10023202
[exp]
0 1
AT2G33800 EMB3113 EMBRYO DEFECTIVE 3113, Ribosom... Lus10015317
[exp]
2.4 0.9334
AT4G25080 CHLM magnesium-protoporphyrin IX me... Lus10036021
[exp]
3.2 0.9515
AT5G66055 EMB16, EMB2036,... EMBRYO DEFECTIVE 2036, EMBRYO ... Lus10028399
[exp]
3.9 0.9297
AT3G01480 ATCYP38, CYP38 ARABIDOPSIS CYCLOPHILIN 38, cy... Lus10032151
[exp]
4.7 0.9336
AT3G25660 Amidase family protein (.1) Lus10020781
[exp]
5.7 0.9087
AT5G36170 ATPRFB, HCF109 high chlorophyll fluorescent 1... Lus10036446
[exp]
6.3 0.9171
AT3G53460 CP29 chloroplast RNA-binding protei... Lus10023191
[exp]
6.9 0.9288
AT2G20890 PSB29, THF1 THYLAKOID FORMATION1, photosys... Lus10018528
[exp]
7.5 0.9283
AT1G68590 Ribosomal protein PSRP-3/Ycf65... Lus10021693
[exp]
9.4 0.9300
AT5G16710 DHAR3 dehydroascorbate reductase 1 (... Lus10028510
[exp]
9.7 0.9184

Lus10023202 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.