Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30360 1001 / 0 ATCNGC17 cyclic nucleotide-gated channel 17 (.1) AT2G24610 962 / 0 ATCNGC14 cyclic nucleotide-gated channel 14 (.1) AT5G14870 823 / 0 ATCNGC18 cyclic nucleotide-gated channel 18 (.1) AT3G48010 791 / 0 ATCNGC16 cyclic nucleotide-gated channel 16 (.1) AT2G28260 760 / 0 ATCNGC15 cyclic nucleotide-gated channel 15 (.1) AT4G30560 705 / 0 ATCNGC9 cyclic nucleotide gated channel 9 (.1.2) AT1G19780 703 / 0 ATCNGC8 cyclic nucleotide gated channel 8 (.1) AT5G57940 702 / 0 ATCNGC5 cyclic nucleotide gated channel 5 (.1.2.3) AT1G15990 701 / 0 ATCNGC7 cyclic nucleotide gated channel 7 (.1) AT2G23980 692 / 0 ATCNGC6 CYCLIC NUCLEOTIDE GATED CHANNEL 6, cyclic nucleotide-gated channel 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015510 [exp] 1233 / 0 AT4G30360 1004 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10019983 [exp] 1220 / 0 AT4G30360 1000 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10042434 [exp] 890 / 0 AT2G24610 916 / 0.0 cyclic nucleotide-gated channel 14 (.1) Lus10026233 [exp] 874 / 0 AT2G24610 922 / 0.0 cyclic nucleotide-gated channel 14 (.1) Lus10020122 [exp] 853 / 0 AT2G24610 879 / 0.0 cyclic nucleotide-gated channel 14 (.1) Lus10026924 [exp] 838 / 0 AT2G24610 868 / 0.0 cyclic nucleotide-gated channel 14 (.1) Lus10039486 [exp] 835 / 0 AT5G14870 985 / 0.0 cyclic nucleotide-gated channel 18 (.1) Lus10039415 [exp] 833 / 0 AT5G14870 980 / 0.0 cyclic nucleotide-gated channel 18 (.1) Lus10002363 [exp] 816 / 0 AT3G48010 919 / 0.0 cyclic nucleotide-gated channel 16 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G097600 [exp] 1134 / 0 AT4G30360 1015 / 0.0 cyclic nucleotide-gated channel 17 (.1) Potri.018G009200 [exp] 972 / 0 AT2G24610 939 / 0.0 cyclic nucleotide-gated channel 14 (.1) Potri.017G067000 [exp] 832 / 0 AT3G48010 964 / 0.0 cyclic nucleotide-gated channel 16 (.1) Potri.013G108200 [exp] 798 / 0 AT5G14870 949 / 0.0 cyclic nucleotide-gated channel 18 (.1) Potri.009G010700 [exp] 783 / 0 AT2G28260 1052 / 0.0 cyclic nucleotide-gated channel 15 (.1) Potri.018G106100 [exp] 734 / 0 AT5G57940 1030 / 0.0 cyclic nucleotide gated channel 5 (.1.2.3) Potri.012G002200 [exp] 684 / 0 AT5G53130 1087 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.014G097900 [exp] 681 / 0 AT1G01340 901 / 0.0 cyclic nucleotide gated channel 10 (.1.2) Potri.015G019100 [exp] 680 / 0 AT5G53130 1024 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.002G170000 [exp] 679 / 0 AT1G01340 909 / 0.0 cyclic nucleotide gated channel 10 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0030 [flax] [poplar] Ion_channel PF00520 [flax] [poplar] Ion_trans Ion transport protein CL0029 [flax] [poplar] Cupin PF00027 [flax] [poplar] cNMP_binding Cyclic nucleotide-binding domain
Representative CDS sequence Show only first row Show all	>Lus10023203 pacid=23181083 polypeptide=Lus10023203 locus=Lus10023203.g ID=Lus10023203.BGIv1.0 annot-version=v1.0 ATGGTGGCGGTGGTGGTGCCGGCAGCTTCATCCTCAGCGTTGCCCATCAACGGAGGAGGAAAGCTTTTCCCCCGTTCTCCACCTTCAACGCTCTCCTTCC ATCACAACAAGTGGAGTTTTGCAGTAGTTCAACCTGATGGCAACTCTGTAGCTTGTAGAACAAAGAGCCAAGTATCCCGAATCTCTGCCAATCCCAATGT TTCTGGGAGTGGATATACCAAGGCTGAGGTGATCATGGTCGATCCGACGGAGGCAAAGCGATTAGCTGCCAAACAAATGGTGGAAATCCGTAGGAAGGAG AAATTCGAGAGGCGGATGCAAATTGAAGCAATCAATGGAGCTTGGGCTATGATAGGTCTCACAGCAGGTTTGGTCATTGAAGGTTACACTGGAAAGAGCA TACTAGAACAGGAGATTCATGGGCGCAAGTTGATTGAATTGCAGCGAACAATGGAGTTGAAGAAGGAAAAGCTTGTGAGGTTTTATCAAGAGGGTAAACA GTTACACAAAGGGTTTCCATGGGGGAAGGGAGATACAGTCTATCCTGAAAACCCATCATCTTCGTTGCTTAATCCTGGGAAGATGGGGAGTAACAACAAG ACAAGACAGCTCGGATCGAAGGTCTTTTCAGAGGACTATCGACCTTGGCATGCGAAAATGCTGGATCCTGGGAGTGATATTGTGTTAAGATGGAACAGGA TCTTCCTTGTCTCTTGTTTGATGGCTCTCTTCATTGATCCGCTCTACTTTTATCTGCCAACCATCATCACAGGGAAGGATGATGCGTGTGTTGACACCGA TCACAAGTTGCGAATCGTGGTCACCTTCTTCCGGACCGTTGCAGATCTTTTCTACCTGTTACATATGGTTTTGAAGTTCAGGACTGCTTACGTTGCACCG AGTTCTCGTGTGTTTGGAAGGGGCGAACTTGTGATGGATCCTAAGTTGATTTCTAGGAGGTACATCCGGTCTGACTTCTTCATTGATCTCATTGCCACTC TGCCACTCCCTCAGATAGTTGCATGGTTCATCATCCCAGCGACTAGAAAGCCTCGAACAGATCATAACAACAATGCGCTGGCTTTGATTGTGTTGCTTCA ATACATCCCAAGATTGTATCTTATCTTTCCTCTGAGTTCACAAATTATTAAGGCTACTGGGTTGGTAACAAGGACAGCTTGGGCTGGAGCTGCTTACAAT CTGCTCTTGTACATGCTAGCAAGCCATGTTCTAGGAGCATCATGGTATTTGTTATCCGTTGAGAGGCATACAACCTGCTGGAAATCAATTTGCAGAAACG AGACTTCTCCGGTTAAATGCGAGCTTCACTACCTTGCTTGCGATGCTTTTAACCACGACGATCGAAGAAGTTGGGCAAAGAGTACATCTGTTTTCCAAAA TTGTGATCCTAGTAAGAAAATCGAGTTCCAACATGGGCTATTCGGAAATGCCGTGACGAAGAAGGTTGTCTCCACATGTTTCATGGACAAGTATTTGTAT TGCTTGTGGTGGGGGTTACAGCAATTAAGGCAAGTCTCTTTCCTTCCTTGTTCATATGGCCAGAATTTGTCAACAAGTACATTTATTGGGGAGACATCAT TTGCCATTCTGATTTCCATCATGGGTCTTGTTCTTTTTGCCCATTTGATTGGCAATATGCAGACATACCTGCAATCACTCACTGTAAGACTTGAGGAATG GAGGCTTAAGCGAAGAGATACTGAAGAATGGATGAAACATCGCCAACTCCCCGAAGACCTGAAGCAACGCGTTCGACGTTTCATTCAATACAAGTGGGTT GCGACTCGAGGTGTTCACGAGGATGATATCCTACGTGGCTTACCTACTGATCTTCGTCGCAATATTCAGCGCCACCTCTGCCTTGACCTTGTTCGACGAG TCCCTTTCTTCTCGCAGATGGACGATCAGCTCCTCGATGCAATATGCGAGCGCCTGGTGTCTTCCCTTAGCACACCAGGAACCTACATTGTCCGGGAAGG CGACCCTGTGACAGAGATGTTGTTCATCATTAGGGGAAGTCTCGAAAGCTCGACCACGAACGGTGGGAGGACCGGTTTCTTCAACTCGATCATGCTCAAG CCAGGTGATTTTTGCGGAGAGGAGCTTTTAGCGTGGGCATTGCAGCCCAAGTCATCTCTTAACCTGCCGTCCTCGACACGAACTGTCAGGGCTCTCAACG AGGTCGAAGCCTTCGCTCTACAAGCCGAGGATCTCAGGTTCGTGGCTAATCAATTCAGACGCTTGCATAGCAAGAAGCTGCAGCATACGTTCCGGTACCA CTCGCATCATTGGAGGACATGGGCGGCATGCTTCGTGCAAGCAGCTTGGCGACGGCACAAGAAGAGGTTGGTGGAACATAGCCTCACCATGTCCGAATCG TTTCATATGAACGCGCAGCTACTAGCACCACACAACGAAGGACAAAGCTCGAACCTTTCTTCTCACCAGGCGAAGGTGAATCTTGGAGTGACAATGCTGG CCTCGAGATTTGCTGCCAACACGAGGAGAGGAGTGCAGAAGACGAAAGAGGTGGATATGCCGAAACTGCAGAAGCCTGAGGAGCCTGACTTCTCTGCTGA TGCTGACTGA
AA sequence Show only first row Show all	>Lus10023203 pacid=23181083 polypeptide=Lus10023203 locus=Lus10023203.g ID=Lus10023203.BGIv1.0 annot-version=v1.0 MVAVVVPAASSSALPINGGGKLFPRSPPSTLSFHHNKWSFAVVQPDGNSVACRTKSQVSRISANPNVSGSGYTKAEVIMVDPTEAKRLAAKQMVEIRRKE KFERRMQIEAINGAWAMIGLTAGLVIEGYTGKSILEQEIHGRKLIELQRTMELKKEKLVRFYQEGKQLHKGFPWGKGDTVYPENPSSSLLNPGKMGSNNK TRQLGSKVFSEDYRPWHAKMLDPGSDIVLRWNRIFLVSCLMALFIDPLYFYLPTIITGKDDACVDTDHKLRIVVTFFRTVADLFYLLHMVLKFRTAYVAP SSRVFGRGELVMDPKLISRRYIRSDFFIDLIATLPLPQIVAWFIIPATRKPRTDHNNNALALIVLLQYIPRLYLIFPLSSQIIKATGLVTRTAWAGAAYN LLLYMLASHVLGASWYLLSVERHTTCWKSICRNETSPVKCELHYLACDAFNHDDRRSWAKSTSVFQNCDPSKKIEFQHGLFGNAVTKKVVSTCFMDKYLY CLWWGLQQLRQVSFLPCSYGQNLSTSTFIGETSFAILISIMGLVLFAHLIGNMQTYLQSLTVRLEEWRLKRRDTEEWMKHRQLPEDLKQRVRRFIQYKWV ATRGVHEDDILRGLPTDLRRNIQRHLCLDLVRRVPFFSQMDDQLLDAICERLVSSLSTPGTYIVREGDPVTEMLFIIRGSLESSTTNGGRTGFFNSIMLK PGDFCGEELLAWALQPKSSLNLPSSTRTVRALNEVEAFALQAEDLRFVANQFRRLHSKKLQHTFRYHSHHWRTWAACFVQAAWRRHKKRLVEHSLTMSES FHMNAQLLAPHNEGQSSNLSSHQAKVNLGVTMLASRFAANTRRGVQKTKEVDMPKLQKPEEPDFSADAD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30360		ATCNGC17	cyclic nucleotide-gated channe...		Lus10023203 [exp]	0	1
					Lus10023403 [exp]	2.0	0.9140
AT1G50940		ETFALPHA	electron transfer flavoprotein...		Lus10011156 [exp]	4.6	0.9124
AT1G16670			Protein kinase superfamily pro...		Lus10042851 [exp]	5.8	0.9154
AT4G00620		EMB3127	EMBRYO DEFECTIVE 3127, Amino a...		Lus10017822 [exp]	7.2	0.8997
AT3G46020			RNA-binding (RRM/RBD/RNP motif...		Lus10040854 [exp]	7.3	0.8972
AT2G43080		AT-P4H-1	P4H isoform 1 (.1)		Lus10031048 [exp]	8.1	0.8797
AT1G29040			unknown protein		Lus10013930 [exp]	8.8	0.9024
AT2G39000			Acyl-CoA N-acyltransferases (N...		Lus10040401 [exp]	9.2	0.8993
AT5G11330			FAD/NAD(P)-binding oxidoreduct...		Lus10013122 [exp]	9.5	0.9037
AT5G37590			Tetratricopeptide repeat (TPR)...		Lus10020809 [exp]	10.2	0.8980

Compare expression of checked genes

Lus10023203 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.