Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18680 58 / 2e-09 unknown protein AT2G18690 56 / 8e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015508 [exp] 325 / 5e-111 AT2G18680 64 / 1e-11 unknown protein Lus10008900 [exp] 207 / 7e-63 AT4G30360 375 / 3e-122 cyclic nucleotide-gated channel 17 (.1) Lus10019981 [exp] 132 / 7e-38 ND 37 / 0.003
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G250300 [exp] 43 / 0.0002 AT1G31130 70 / 2e-13 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023204 pacid=23181091 polypeptide=Lus10023204 locus=Lus10023204.g ID=Lus10023204.BGIv1.0 annot-version=v1.0 ATGGAGCTCTCATCATGGTTTAAAGAGTTACTCGCCATTTTGGCAGAATCCTTCAAAATCTTCCCTAAAAATCCAACCTTCATGGCTTGGGTTACTATAC TCATCCTCACCTTCAACACTTTGGTCTACTCCATCACCCTTTGCTTCCTCAAGCTGATGCTCAAATCTTACGAAGACATCACAGTCCATCTCGATCCGAA CAAGATCGTCACAACCTTGGCTACCGTCTTCATCTATCAATCGATCATCGCCCTGCTCTTATCTATGTCGTCTTTCATCATCGCTTCAACCACGATCCTT GTTTCCGCCATTACATACAGAGGGAATAAATCGGTTCCAACGGTAGCACGATTTTTGAAAAATGTCGTTTTGTCGTGGAAAGGACCGTTCATAACATGGA TTCACACAACGGTTTTCATCGTGGGATACATGTGCCTTATCTTTGCGGTTATGTATCCTTTTACGCTTTTATTCAGTTCCAACCCGCAACTTTTGGTTAA CACATCGTTCGCTTTTGCCCTTTTGGGTTTGATACTATACTTCTATGTCGATGTCGTGTTGAGTTTGGGCCTAGTGGTCGCGGTCGTGGAGCAGGAAATA CACGGGCTCGAAGCGATTGGGAAGGCGGCTAAGATTTCGAAAGGGATGAAGCTACATGGGTTTGTTGTGAACCTCATGTATGGAATGGTGGGTTGGGGTT TGGTTAAGTTAATGTCTGTGGTCGGCTTTCAGTTTCCACCGGTCGGGATGGGTTTGGCCGGGTTTGGGTGGCCAACAACCGGTCAATTGTTTCTAGGGTT GGTTTTGTCGAGTTGTTTTTGTGTGATTAAGATGTTATGGTGGATGGCTTATTCAATTATGTTCTTTGAGGGGATGCAGAGACATGGAGAAGAGGTTCTT GAGTTGGTGGAAGAAGTGGATCATCAGTACACCAAAGTCCCTATTGTAACTACAGTTTGA
AA sequence Show only first row Show all	>Lus10023204 pacid=23181091 polypeptide=Lus10023204 locus=Lus10023204.g ID=Lus10023204.BGIv1.0 annot-version=v1.0 MELSSWFKELLAILAESFKIFPKNPTFMAWVTILILTFNTLVYSITLCFLKLMLKSYEDITVHLDPNKIVTTLATVFIYQSIIALLLSMSSFIIASTTIL VSAITYRGNKSVPTVARFLKNVVLSWKGPFITWIHTTVFIVGYMCLIFAVMYPFTLLFSSNPQLLVNTSFAFALLGLILYFYVDVVLSLGLVVAVVEQEI HGLEAIGKAAKISKGMKLHGFVVNLMYGMVGWGLVKLMSVVGFQFPPVGMGLAGFGWPTTGQLFLGLVLSSCFCVIKMLWWMAYSIMFFEGMQRHGEEVL ELVEEVDHQYTKVPIVTTV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18680			unknown protein		Lus10023204 [exp]	0	1
AT1G69670		CUL3B, ATCUL3B	ARABIDOPSIS THALIANA CULLIN 3B...		Lus10009610 [exp]	2.4	0.9457
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10024076 [exp]	4.9	0.9531
					Lus10008211 [exp]	8.5	0.9395
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10014498 [exp]	14.1	0.9414
AT2G31945			unknown protein		Lus10039201 [exp]	17.5	0.9262
AT2G18210			unknown protein		Lus10028324 [exp]	19.0	0.9439
AT5G26340		ATSTP13, MSS1, ...	SUGAR TRANSPORT PROTEIN 13, Ma...		Lus10010534 [exp]	21.9	0.9450
AT3G48410			alpha/beta-Hydrolases superfam...		Lus10022722 [exp]	23.0	0.9384
AT5G45230			Disease resistance protein (TI...		Lus10012247 [exp]	24.4	0.9328
AT2G31945			unknown protein		Lus10013740 [exp]	27.6	0.9337

Compare expression of checked genes

Lus10023204 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.