Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30400 95 / 2e-22 RING/U-box superfamily protein (.1) AT2G18650 87 / 2e-19 MEE16 maternal effect embryo arrest 16, RING/U-box superfamily protein (.1) AT1G23980 79 / 6e-17 RING/U-box superfamily protein (.1) AT5G40250 77 / 5e-16 RING/U-box superfamily protein (.1) AT3G48030 72 / 2e-14 hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein (.1) AT5G57750 70 / 3e-14 RING/U-box superfamily protein (.1) AT4G09130 62 / 4e-11 RING/U-box superfamily protein (.1) AT3G05200 59 / 4e-10 ATL6 RING/U-box superfamily protein (.1) AT2G47560 58 / 4e-10 RING/U-box superfamily protein (.1) AT5G27420 57 / 2e-09 CNI1, ATL31 carbon/nitrogen insensitive 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015502 [exp] 91 / 7e-21 AT4G30400 251 / 1e-79 RING/U-box superfamily protein (.1) Lus10019973 [exp] 87 / 2e-19 AT4G30400 252 / 4e-80 RING/U-box superfamily protein (.1) Lus10032161 [exp] 80 / 5e-17 AT5G40250 413 / 7e-144 RING/U-box superfamily protein (.1) Lus10014526 [exp] 80 / 5e-17 AT5G40250 423 / 6e-148 RING/U-box superfamily protein (.1) Lus10029178 [exp] 77 / 4e-16 AT5G40250 297 / 1e-98 RING/U-box superfamily protein (.1) Lus10012987 [exp] 77 / 4e-16 AT5G40250 302 / 7e-101 RING/U-box superfamily protein (.1) Lus10029794 [exp] 57 / 5e-09 AT1G72200 219 / 1e-66 RING/U-box superfamily protein (.1) Lus10023617 [exp] 55 / 2e-08 AT5G05810 219 / 1e-68 RING/U-box superfamily protein (.1) Lus10000333 [exp] 54 / 3e-08 AT3G05200 309 / 2e-102 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G176700 [exp] 87 / 1e-19 AT4G30400 304 / 3e-98 RING/U-box superfamily protein (.1) Potri.018G098500 [exp] 87 / 2e-19 AT4G30400 339 / 7e-112 RING/U-box superfamily protein (.1) Potri.001G351466 [exp] 81 / 1e-17 AT5G40250 355 / 2e-121 RING/U-box superfamily protein (.1) Potri.017G072300 [exp] 80 / 3e-17 AT5G40250 372 / 7e-128 RING/U-box superfamily protein (.1) Potri.012G078200 [exp] 78 / 2e-16 AT5G40250 241 / 1e-76 RING/U-box superfamily protein (.1) Potri.015G073600 [exp] 77 / 3e-16 AT5G40250 259 / 1e-83 RING/U-box superfamily protein (.1) Potri.005G160900 [exp] 57 / 3e-09 AT1G22500 203 / 5e-61 Arabidopsis thaliana Arabidopsis toxicos en levadura 15, RING/U-box superfamily protein (.1) Potri.005G036800 [exp] 53 / 5e-08 AT3G05200 261 / 7e-84 RING/U-box superfamily protein (.1) Potri.008G219200 [exp] 52 / 7e-08 AT3G16720 197 / 2e-61 TOXICOS EN LEVADURA 2 (.1) Potri.002G140600 [exp] 52 / 7e-08 AT3G60220 194 / 3e-59 TOXICOS EN LEVADURA 4 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023205 pacid=23180985 polypeptide=Lus10023205 locus=Lus10023205.g ID=Lus10023205.BGIv1.0 annot-version=v1.0 ATGACCTGGGTTTCCTTCCAAATCAAACAAACTTCCTTCATAACCCCAACATTCCCACCGCCGACACTCCCTTCCGCCGCCGCCGCTGCCGCTGCCACAA GCAGCGGAGGCGGCCGGCGGGGGCCCGGCCGCAGGAGATGGCGCGCGGGCTTCCTTGAAAGCAAGGTTAGCCCTTCAATCCTCCTCATCATAATAATCCT AGCAATAATATTCTTCATCTCCGGCCTCCTCCACCTACTCATCCGATCCCTCCTCCGGCCGCCGGCAGGCCGCGACCCCGACGGATCGGAAGAATCCGCC ACCGCCCTCCAGGGCCAGCTCCAGCAGCTCTTCCACCTCCACGACGCTGGCGTCGACCAATCCTTCATCGACGAAACTCTCCCTGTCTTCCTCTACAGTG ACGTCATCGCGCCGGCGAAAACGACGCCGTTCGACTGCGCCGTCTGTCTCTGCGAGTTCGAGCAAGAAGACAAGCTCCGGTTTCTCCCCAAATGCAGCCA CCCCCTCCACGAGGGATGCATCGGAACGGGGGGTGCGTCGGGGAATGCATCGATACGTGGCTTCTGTCTCACTCAACTTGCCCACTCTGTCGCTCTTCGC TCCTCGACTTCTCCGAAACGAACGGCGACAACATTGAAACGACCTGCTCCCCTGTCGTTTTGCTGCTCGAATCCGGCAGGGAAAGGGAAAGCAACGAACT TGGTCTTGATCGGACTAATTCGGTTCTGA
AA sequence Show only first row Show all	>Lus10023205 pacid=23180985 polypeptide=Lus10023205 locus=Lus10023205.g ID=Lus10023205.BGIv1.0 annot-version=v1.0 MTWVSFQIKQTSFITPTFPPPTLPSAAAAAAATSSGGGRRGPGRRRWRAGFLESKVSPSILLIIIILAIIFFISGLLHLLIRSLLRPPAGRDPDGSEESA TALQGQLQQLFHLHDAGVDQSFIDETLPVFLYSDVIAPAKTTPFDCAVCLCEFEQEDKLRFLPKCSHPLHEGCIGTGGASGNASIRGFCLTQLAHSVALR SSTSPKRTATTLKRPAPLSFCCSNPAGKGKATNLVLIGLIRF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40250			RING/U-box superfamily protein...		Lus10023205 [exp]	0	1
AT4G30400			RING/U-box superfamily protein...		Lus10023206 [exp]	1.0	0.8772
AT5G41460			Protein of unknown function (D...		Lus10028768 [exp]	6.9	0.8450
AT4G38130		ATHDA19, ATHD1,...	ARABIDOPSIS HISTONE DEACETYLAS...		Lus10001356 [exp]	13.2	0.8479
AT4G18425			Protein of unknown function (D...		Lus10013975 [exp]	29.8	0.8357
AT4G39010		ATGH9B18	glycosyl hydrolase 9B18 (.1)		Lus10031090 [exp]	32.0	0.8147
AT1G67290		GLOX1	glyoxal oxidase 1, glyoxal oxi...		Lus10034959 [exp]	32.9	0.8011
AT5G62170			unknown protein		Lus10027403 [exp]	43.6	0.8161
AT3G03770			Leucine-rich repeat protein ki...		Lus10033407 [exp]	49.4	0.8020
AT3G51740		IMK2	inflorescence meristem recepto...		Lus10002854 [exp]	51.2	0.8205
AT3G16290		EMB2083	embryo defective 2083, AAA-typ...		Lus10037574 [exp]	53.2	0.8138

Compare expression of checked genes

Lus10023205 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.