Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30400 71 / 6e-14 RING/U-box superfamily protein (.1) AT2G18650 64 / 1e-11 MEE16 maternal effect embryo arrest 16, RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008899 [exp] 290 / 6e-100 AT4G30400 95 / 3e-22 RING/U-box superfamily protein (.1) Lus10015502 [exp] 119 / 2e-31 AT4G30400 251 / 1e-79 RING/U-box superfamily protein (.1) Lus10019973 [exp] 112 / 1e-28 AT4G30400 252 / 4e-80 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G098500 [exp] 89 / 4e-20 AT4G30400 339 / 7e-112 RING/U-box superfamily protein (.1) Potri.006G176700 [exp] 82 / 8e-18 AT4G30400 304 / 3e-98 RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023206 pacid=23181087 polypeptide=Lus10023206 locus=Lus10023206.g ID=Lus10023206.BGIv1.0 annot-version=v1.0 ATGGAACGGTATGCTTTCGTGTTTGAGTCCGGCGAACAATCTTTCCGAAGAATACACTCCTCGAGACGAGTTGATTCTCGACCCGAACCATCCAGTAGCG AGATTTCGTTGTCGTCTCGAAACATTATCATTTCGAAACCGGGCGGTTTCGGTCCAGCTAGGGTTGTTAAGGTTAAATTAGGGAAATTTCGTAATGTGGA AGAAGGAAGCGGAGATGGCGATGGCAATGACAATGCTGAGGTTCGGAGATGTCATTCGATGGGTTCGTGCCAATACGTTATGGATTCGAACTCAGCCCTT CAGGTTCCCGTTCGGATTGTGAAGAACAAGAAGAAGAAGGCTGCTACAGGGCATCATCGGTATGCAATGTCGGTCTGCGGGAGTGAATCAGGAAGAGATT TCGACAGATTCGAAGAAGGGTGCGGAAAGAATTCGAGCATTATGCCTGAAAGCTTTTCGATTTCGAAGAAGAATAAGAAACAGGGGAAGGAAAAACAGGG GAGTTTGGATGCAGGGGAAGTGAGCTCTGTTTCAATGAGGTTTCACCCAATGATGAACAGTAGTGAAGTAGGGAGCTCTAGTTGGAATGGTAGGGAATTG GACGATTCGAAAACGCCGTCGTTTGCTAGGAGGACTCTGCTGTGGCTTGCTGGGAGGCAGCAGAACAAGATTGGTGATTCGAATTTGGGTCCAAATAATG TTTAG
AA sequence Show only first row Show all	>Lus10023206 pacid=23181087 polypeptide=Lus10023206 locus=Lus10023206.g ID=Lus10023206.BGIv1.0 annot-version=v1.0 MERYAFVFESGEQSFRRIHSSRRVDSRPEPSSSEISLSSRNIIISKPGGFGPARVVKVKLGKFRNVEEGSGDGDGNDNAEVRRCHSMGSCQYVMDSNSAL QVPVRIVKNKKKKAATGHHRYAMSVCGSESGRDFDRFEEGCGKNSSIMPESFSISKKNKKQGKEKQGSLDAGEVSSVSMRFHPMMNSSEVGSSSWNGREL DDSKTPSFARRTLLWLAGRQQNKIGDSNLGPNNV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30400			RING/U-box superfamily protein...		Lus10023206 [exp]	0	1
AT5G40250			RING/U-box superfamily protein...		Lus10023205 [exp]	1.0	0.8772
AT5G37850		SOS4, ATSOS4	SALT OVERLY SENSITIVE 4, pfkB-...		Lus10009119 [exp]	10.1	0.7545
AT3G16290		EMB2083	embryo defective 2083, AAA-typ...		Lus10011432 [exp]	12.7	0.7917
AT4G28600		NPGR2	no pollen germination related ...		Lus10007743 [exp]	12.8	0.7689
AT3G60220		ATL4	TOXICOS EN LEVADURA 4 (.1)		Lus10019496 [exp]	17.8	0.7877
AT3G24550		ATPERK1	proline-rich extensin-like rec...		Lus10022129 [exp]	37.1	0.7694
AT5G22120			unknown protein		Lus10008366 [exp]	65.0	0.7495
AT4G18820			AAA-type ATPase family protein...		Lus10029265 [exp]	65.1	0.7166
AT3G03770			Leucine-rich repeat protein ki...		Lus10033407 [exp]	68.6	0.7516
AT3G53320			unknown protein		Lus10026478 [exp]	70.0	0.7349

Compare expression of checked genes

Lus10023206 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.