Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24560 194 / 3e-61 ATPP2-B12 phloem protein 2-B12 (.1) AT2G02240 190 / 8e-59 MEE66 maternal effect embryo arrest 66, F-box family protein (.1) AT2G02360 186 / 7e-58 ATPP2-B10 phloem protein 2-B10 (.1) AT1G80110 185 / 1e-57 ATPP2-B11 phloem protein 2-B11 (.1) AT2G02230 187 / 3e-57 ATPP2-B1 phloem protein 2-B1 (.1) AT2G02250 186 / 3e-57 ATPP2-B2 phloem protein 2-B2 (.1) AT2G02340 172 / 4e-52 ATPP2-B8 phloem protein 2-B8 (.1) AT2G02300 147 / 3e-42 ATPP2-B5 phloem protein 2-B5 (.1) AT1G09155 147 / 3e-42 ATPP2-B15 phloem protein 2-B15 (.1) AT2G02310 140 / 1e-39 ATPP2-B6 phloem protein 2-B6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008898 [exp] 468 / 2e-168 AT5G24560 212 / 3e-68 phloem protein 2-B12 (.1) Lus10042713 [exp] 219 / 7e-70 AT2G02230 235 / 1e-75 phloem protein 2-B1 (.1) Lus10029674 [exp] 209 / 2e-66 AT2G02230 237 / 2e-76 phloem protein 2-B1 (.1) Lus10025666 [exp] 204 / 1e-63 AT5G24560 219 / 5e-69 phloem protein 2-B12 (.1) Lus10018171 [exp] 204 / 1e-63 AT2G02240 219 / 2e-69 maternal effect embryo arrest 66, F-box family protein (.1) Lus10020674 [exp] 172 / 3e-52 AT1G09155 266 / 7e-89 phloem protein 2-B15 (.1) Lus10029872 [exp] 169 / 6e-51 AT1G09155 272 / 3e-91 phloem protein 2-B15 (.1) Lus10020673 [exp] 168 / 1e-50 AT1G09155 272 / 2e-91 phloem protein 2-B15 (.1) Lus10029673 [exp] 151 / 2e-44 AT2G02230 180 / 4e-55 phloem protein 2-B1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G267000 [exp] 215 / 1e-68 AT2G02240 239 / 1e-77 maternal effect embryo arrest 66, F-box family protein (.1) Potri.018G015800 [exp] 208 / 8e-66 AT2G02240 242 / 1e-78 maternal effect embryo arrest 66, F-box family protein (.1) Potri.018G016100 [exp] 198 / 3e-62 AT2G02250 217 / 2e-69 phloem protein 2-B2 (.1) Potri.018G016000 [exp] 191 / 4e-59 AT2G02250 220 / 2e-70 phloem protein 2-B2 (.1) Potri.005G022000 [exp] 187 / 4e-58 AT1G09155 290 / 4e-98 phloem protein 2-B15 (.1) Potri.006G266900 [exp] 186 / 4e-57 AT2G02240 215 / 2e-68 maternal effect embryo arrest 66, F-box family protein (.1) Potri.001G050100 [exp] 169 / 6e-51 AT2G02360 219 / 5e-71 phloem protein 2-B10 (.1) Potri.013G012600 [exp] 168 / 1e-50 AT1G09155 281 / 1e-94 phloem protein 2-B15 (.1) Potri.006G117600 [exp] 99 / 5e-24 AT3G53000 486 / 2e-175 phloem protein 2-A15 (.1) Potri.013G012666 [exp] 92 / 2e-22 AT1G09155 120 / 2e-33 phloem protein 2-B15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10023207 pacid=23181027 polypeptide=Lus10023207 locus=Lus10023207.g ID=Lus10023207.BGIv1.0 annot-version=v1.0 ATGGAGAAGCAGAGCAAAATTTCATCATCAGCTGGTAGTATAAACATCAACAATCTCCCTGAAGATTGCTTAGCAGAGATCTTATCCCAAACCGGACCCA TCGAATCTTGCAGGCTAGCTATCGTTTCTCCATCCTTCAGCTCCGCTTCCAATTCCTCCACCGTCTGGGACAAGTTTCTCCCGCCGGATTGCCACGCCAT CCTCTCCCGTTCTTCTTCCGACGATCGAGCTTCTCTTCCGAAGAAACAGCTCTTCCTCAGCCTCTGTCGACACCCAGTCCTAATCGACGGCGGAAGAAAG AGTTTCTCGCTGGACAAACGGACTGGGAAGAAGTGCTTCATGATATCTGCTAGAGAGCTCCGGATCGAATGGGGCGATAGCCCTCTCTACTGGAGATGGA TTTCCCATCCCGATTCCAGATTCGCTGAAGTGGCGGAGCTGGTGGACGTGTGTTGGTTCGAGATCAGGGGAACGATAGAGACCCATCTGCTGTCTCCATC AACCCAGTACGCAGCTTACTTGGTGTTCAAGTACTTCCCGAAGAGGACCGCGTTCCGGCTAGGATTCCACCGGCAGGATTTCACGGCGACGGTAGAAGAA TCGAGCCGGACGGTGTGTTTGGAGATAGGAACAGGGGATTGGAGGAGGCAGTTTGGGATGTACAATGTAGGGGGAAACGATGCAGAGGAGATGGAATTTG AATTTCCGAAGCAGAGGAAGGATGGATGGCTCGAAGCAGAGCTTGGTGAATTCTATGTGGGCGGAAATGGAGATATGGTGGAGGTGGAAATAGGGTTGAA GGAAGTTATCTCTGGTCCGAAATCTGGAATGGTGGTTCTTGGCATGGAGATTAGGCCTAAAGGTTAG
AA sequence Show only first row Show all	>Lus10023207 pacid=23181027 polypeptide=Lus10023207 locus=Lus10023207.g ID=Lus10023207.BGIv1.0 annot-version=v1.0 MEKQSKISSSAGSININNLPEDCLAEILSQTGPIESCRLAIVSPSFSSASNSSTVWDKFLPPDCHAILSRSSSDDRASLPKKQLFLSLCRHPVLIDGGRK SFSLDKRTGKKCFMISARELRIEWGDSPLYWRWISHPDSRFAEVAELVDVCWFEIRGTIETHLLSPSTQYAAYLVFKYFPKRTAFRLGFHRQDFTATVEE SSRTVCLEIGTGDWRRQFGMYNVGGNDAEEMEFEFPKQRKDGWLEAELGEFYVGGNGDMVEVEIGLKEVISGPKSGMVVLGMEIRPKG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02240		MEE66	maternal effect embryo arrest ...		Lus10023207 [exp]	0	1
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Lus10019833 [exp]	2.4	0.9874
AT4G35180		LHT7	LYS/HIS transporter 7 (.1)		Lus10022642 [exp]	2.4	0.9856
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10009137 [exp]	3.0	0.9842
AT1G20925			Auxin efflux carrier family pr...		Lus10016046 [exp]	4.4	0.9792
					Lus10000858 [exp]	5.0	0.9840
AT1G16120		WAKL1	wall associated kinase-like 1 ...		Lus10008105 [exp]	7.7	0.9839
AT2G18620			Terpenoid synthases superfamil...		Lus10009136 [exp]	8.0	0.9833
AT5G40690			unknown protein		Lus10010488 [exp]	8.1	0.9784
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10023259 [exp]	11.0	0.9784
AT1G66160		ATCMPG1	"CYS, MET, PRO, and GLY protei...		Lus10040124 [exp]	12.2	0.9840

Compare expression of checked genes

Lus10023207 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.