Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57790 44 / 1e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008896 [exp] 277 / 9e-96 ND 44 / 3e-05
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023209 pacid=23181074 polypeptide=Lus10023209 locus=Lus10023209.g ID=Lus10023209.BGIv1.0 annot-version=v1.0 ATGGCAAGTAAAGCTCCGTTACGAACAGTTCTGAAGATGAAGAAGAAACCCACCAAGAGATACAACAGAGGATCGTGGTTACAGAAAGCCGTCAACTATC TGAAATCCGATTCCTACCTCTTCGCTCCTCTGCTCGATCCTTCGCCGTCGACGACCAACAATGGATGTTCGTCGGCGCTAAATCCTAGATTCCCATGGTT TCGAAGGAAGAGTAGTAAAGGGTTGATCGGAGATAATGTTATGGAGTATCTGAAGTCTGATTCTTACTTGTACGGTCCCTTGCTGGTGAATCAAAGGCCA GTTGATGGTGATTTTAAGAAAATGATGAGTAAGGACAAAAACAAATATTCCTCTGTTTTGGAGCCGTCAAATGTAACGGCGGAGAAAGAAGACGTTGTGC TTCCACTTACCCCGGAAAGGAACCACATCAATGGTGGTCATCAGCGGCAGAAGAAATCGGTACAACGTAAGGAAATGGTGACGGTGACGCACATGGTTCG ACGAAGCTCCCGTTCTTCTCCATCTTCCGCGCCAGGTCAGCTTAGCTTAGGAAACATTTTCATTCAATCAAGTAATTTGTCATGA
AA sequence Show only first row Show all	>Lus10023209 pacid=23181074 polypeptide=Lus10023209 locus=Lus10023209.g ID=Lus10023209.BGIv1.0 annot-version=v1.0 MASKAPLRTVLKMKKKPTKRYNRGSWLQKAVNYLKSDSYLFAPLLDPSPSTTNNGCSSALNPRFPWFRRKSSKGLIGDNVMEYLKSDSYLYGPLLVNQRP VDGDFKKMMSKDKNKYSSVLEPSNVTAEKEDVVLPLTPERNHINGGHQRQKKSVQRKEMVTVTHMVRRSSRSSPSSAPGQLSLGNIFIQSSNLS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57790			unknown protein		Lus10023209 [exp]	0	1
AT2G19170		SLP3	subtilisin-like serine proteas...		Lus10040146 [exp]	6.9	0.6524
AT4G22880		TT18, TDS4, ANS...	TANNIN DEFICIENT SEED 4, ANTHO...		Lus10014134 [exp]	9.4	0.6513
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10029658 [exp]	14.0	0.6461
					Lus10022109 [exp]	14.6	0.6366
					Lus10019378 [exp]	18.1	0.6265
AT3G26770			NAD(P)-binding Rossmann-fold s...		Lus10014228 [exp]	19.0	0.6359
AT3G19020			Leucine-rich repeat (LRR) fami...		Lus10023853 [exp]	23.5	0.6236
AT5G22900		ATCHX3	cation/H+ exchanger 3, ARABIDO...		Lus10041344 [exp]	25.5	0.6341
AT3G52490			Double Clp-N motif-containing ...		Lus10024536 [exp]	26.7	0.6159
					Lus10005297 [exp]	28.1	0.6159

Compare expression of checked genes

Lus10023209 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.