Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30420 362 / 2e-124 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G28040 297 / 4e-99 nodulin MtN21 /EamA-like transporter family protein (.1.2.3.4.5) AT1G75500 230 / 2e-72 WAT1 Walls Are Thin 1 (.1.2) AT3G18200 224 / 1e-70 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT2G39510 222 / 1e-69 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G40900 218 / 1e-67 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G07050 214 / 5e-66 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G21890 213 / 5e-66 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G37460 210 / 6e-65 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08300 209 / 2e-64 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019970 [exp] 319 / 1e-107 AT4G30420 351 / 5e-120 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10019969 [exp] 311 / 1e-104 AT4G28040 334 / 8e-114 nodulin MtN21 /EamA-like transporter family protein (.1.2.3.4.5) Lus10027251 [exp] 243 / 2e-77 AT3G18200 493 / 2e-175 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10038959 [exp] 242 / 2e-77 AT3G18200 497 / 2e-177 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10024301 [exp] 231 / 1e-72 AT1G75500 575 / 0.0 Walls Are Thin 1 (.1.2) Lus10041634 [exp] 226 / 1e-70 AT5G07050 557 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10028030 [exp] 222 / 1e-69 AT4G08300 455 / 8e-161 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10003738 [exp] 221 / 3e-69 AT4G08300 453 / 6e-160 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10008708 [exp] 220 / 2e-68 AT5G07050 552 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G099500 [exp] 437 / 5e-154 AT4G30420 402 / 7e-140 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G177600 [exp] 429 / 7e-151 AT4G30420 375 / 4e-129 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G177700 [exp] 383 / 1e-132 AT4G30420 353 / 1e-120 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G177800 [exp] 296 / 1e-98 AT4G30420 320 / 2e-107 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G233600 [exp] 243 / 2e-77 AT1G75500 584 / 0.0 Walls Are Thin 1 (.1.2) Potri.015G042900 [exp] 236 / 4e-75 AT3G18200 476 / 4e-169 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.002G029100 [exp] 232 / 3e-73 AT1G75500 578 / 0.0 Walls Are Thin 1 (.1.2) Potri.001G032500 [exp] 229 / 4e-72 AT5G07050 530 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G085100 [exp] 225 / 1e-70 AT1G21890 481 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.010G209200 [exp] 224 / 2e-70 AT2G39510 503 / 3e-179 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10023211 pacid=23181008 polypeptide=Lus10023211 locus=Lus10023211.g ID=Lus10023211.BGIv1.0 annot-version=v1.0 ATGGAGAATTACAGACCAGAGATAGCCATGGCGTCTCTACAATTCTCATACGCAGTGGTTTCGCTAGCTGGAAGGGCCGCCCTTCTAGAAGGTTTGAGCC CCAGGGTTTTCGTTGTCTACAGACAGTCCATTGCCGCTCTCACCATCTCCCCCGTTGCTTACTTCTCAAGCAGCAGGGGGAAATCAGGCGGCTCTTCCAT TGGGATCAGAAGCTTCACTCTGATTTTTCTGGCTGCTCTCATAGGTGTGACAATCAACCAGAACCTTTACTTCCAAGGCATCTACTTGGCCTCCTCTTCA ATGGGCAGCGCAACCGGAAATCTAGTCCCCGGGATCACTTTCGTCATGGCAACGATTTTTGGATTGGAGAAGGTTAACATGAGGAGTATAAGGAGCATAG CGAAGATAGTGGGAACAATTATATGTGTGAGTGGAGCTCTAACAATGGCACTAATCAAAGGGCCACAACTTGTTTTGAACAATGGTTCGAGAGGGAGTGA GGATTGGCTCTTGGGATGTGGCTTTCTCTTTGCTAGTGCTTGTTGTTGGTCCATTTGGCTCATTTTACAGGTTCCAGTCACTACAGCCTACCCGGATCAT CTGTGGGTGTCGGCTTGGATGTGCTTCCTAGGAGCATTACAATCAGGGATTCTAACATTTTTCATGGAAACGGATCTCAACGCTTGGAAGTTAACTTCAT ACCTTCAACTCATTTCTTGTTTATTCACGGGAGTCGTGGGATCGGGAATCGCATTCTTTGTTCAAGCATGGTGCATTTCGAAGAGAGGGCCGTTGTTCTC TGCATTGTTCAACCCTCTTTGCACTGTTATAGTCACCGTGTTGGCTACGTTCCTTCTGGATGAGAAAATCTACGTTGGAAGCTTGGTAGGAGCACTTGGA GTGATACTCGGACTGTACGCAGTGTTGTGGGGGAAATCGAAAGATTATGAGATCAAAGTCGAAGTAGAAACCGATCCGAAATCGGCTAAAGATGAAGCCG GAAGTGGAATTAGTGATCTTGAGGAGCCCCTTTTGTGTACCGAGATATGA
AA sequence Show only first row Show all	>Lus10023211 pacid=23181008 polypeptide=Lus10023211 locus=Lus10023211.g ID=Lus10023211.BGIv1.0 annot-version=v1.0 MENYRPEIAMASLQFSYAVVSLAGRAALLEGLSPRVFVVYRQSIAALTISPVAYFSSSRGKSGGSSIGIRSFTLIFLAALIGVTINQNLYFQGIYLASSS MGSATGNLVPGITFVMATIFGLEKVNMRSIRSIAKIVGTIICVSGALTMALIKGPQLVLNNGSRGSEDWLLGCGFLFASACCWSIWLILQVPVTTAYPDH LWVSAWMCFLGALQSGILTFFMETDLNAWKLTSYLQLISCLFTGVVGSGIAFFVQAWCISKRGPLFSALFNPLCTVIVTVLATFLLDEKIYVGSLVGALG VILGLYAVLWGKSKDYEIKVEVETDPKSAKDEAGSGISDLEEPLLCTEI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30420			nodulin MtN21 /EamA-like trans...		Lus10023211 [exp]	0	1
AT4G11290			Peroxidase superfamily protein...		Lus10027163 [exp]	2.0	0.9415
AT3G18180			Glycosyltransferase family 61 ...		Lus10036003 [exp]	2.2	0.9521
AT3G02230		ATRGP1, RGP1	ARABIDOPSIS THALIANA REVERSIBL...		Lus10022443 [exp]	9.5	0.9078
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10012002 [exp]	10.1	0.8695
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Lus10001460 [exp]	11.7	0.8241
					Lus10014263 [exp]	13.0	0.8813
AT1G02460			Pectin lyase-like superfamily ...		Lus10009994 [exp]	13.2	0.9044
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10015127 [exp]	14.0	0.9295
AT3G26270		CYP71B25	"cytochrome P450, family 71, s...		Lus10027427 [exp]	16.9	0.8873
AT3G45070			P-loop containing nucleoside t...		Lus10031624 [exp]	17.5	0.8740

Compare expression of checked genes

Lus10023211 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.