Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30440 199 / 6e-63 GAE1 UDP-D-glucuronate 4-epimerase 1 (.1) AT2G45310 160 / 9e-48 GAE4 UDP-D-glucuronate 4-epimerase 4 (.1) AT1G02000 160 / 1e-47 GAE2 UDP-D-glucuronate 4-epimerase 2 (.1) AT4G00110 158 / 4e-47 GAE3 UDP-D-glucuronate 4-epimerase 3 (.1) AT3G23820 154 / 2e-45 GAE6 UDP-D-glucuronate 4-epimerase 6 (.1) AT4G12250 136 / 1e-38 GAE5 UDP-D-glucuronate 4-epimerase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008893 [exp] 223 / 7e-72 AT4G30440 767 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Lus10015496 [exp] 194 / 9e-61 AT4G30440 764 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Lus10009288 [exp] 160 / 1e-47 AT4G00110 704 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10015876 [exp] 160 / 2e-47 AT4G00110 751 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10000787 [exp] 158 / 5e-47 AT4G00110 731 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10030281 [exp] 158 / 9e-47 AT4G00110 753 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10019967 [exp] 155 / 4e-46 AT4G30440 688 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Lus10016640 [exp] 147 / 2e-42 AT3G23820 746 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Lus10022552 [exp] 146 / 4e-42 AT3G23820 742 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G100400 [exp] 206 / 1e-65 AT4G30440 771 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Potri.006G178500 [exp] 202 / 4e-64 AT4G30440 757 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Potri.014G068400 [exp] 162 / 9e-49 AT1G02000 714 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Potri.002G146500 [exp] 161 / 4e-48 AT1G02000 724 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Potri.001G320000 [exp] 160 / 1e-47 AT3G23820 714 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Potri.017G059100 [exp] 158 / 1e-46 AT3G23820 724 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Potri.012G128200 [exp] 152 / 6e-45 AT1G02000 544 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Potri.002G116750 [exp] 131 / 1e-39 AT2G45310 209 / 6e-67 UDP-D-glucuronate 4-epimerase 4 (.1) Potri.003G114600 [exp] 129 / 4e-36 AT4G12250 587 / 0.0 UDP-D-glucuronate 4-epimerase 5 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023213 pacid=23180920 polypeptide=Lus10023213 locus=Lus10023213.g ID=Lus10023213.BGIv1.0 annot-version=v1.0 ATGGCGTACTTCTCCTTCACGAGAAACATCCTCCAAGGGAAGCCGATCACGGTTTACCGGGGCAAGGACAGGGTCGATTTGGCCCGGGATTTCACCTACA TTGACGATATAGTTAAAGGGTGTTTAGGTTCGCTGGATACTTCGGGGAAGAGTACCGGGTCGGGCGGGAAGAAAGCGGGTCCTGCACCGTATAGGATATT CAACTTGGGGAATACTTCTCCGGTGACGGTGCCGAACTTGGTGGCGATACTGGAAAGGCATCTGAAGACGAAGGCGAAGAGGAAGGTGGTGGATATGCCT GGAAACGGCGACGTACCGTACACCCACGCGAATATTAGCTTGGCGAGGAAGGAGCTCGGGAACAAACCGACGACGGATTTGCAGAGAGGAAGGTGGTGGA TATGCCTGGAAACGGCGACGTACCGTACACCCACGCGAATATTAGCTTGGCGAGGAAGGAGCTCGGGTACAAACCGACGACGGATTTGCAGACCGGGTTG A
AA sequence Show only first row Show all	>Lus10023213 pacid=23180920 polypeptide=Lus10023213 locus=Lus10023213.g ID=Lus10023213.BGIv1.0 annot-version=v1.0 MAYFSFTRNILQGKPITVYRGKDRVDLARDFTYIDDIVKGCLGSLDTSGKSTGSGGKKAGPAPYRIFNLGNTSPVTVPNLVAILERHLKTKAKRKVVDMP GNGDVPYTHANISLARKELGNKPTTDLQRGRWWICLETATYRTPTRILAWRGRSSGTNRRRICRPG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Lus10023213 [exp]	0	1
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Lus10008893 [exp]	1.4	0.9261
AT3G60520			unknown protein		Lus10028179 [exp]	2.4	0.8978
AT4G14450		ATBET12	unknown protein		Lus10021208 [exp]	3.2	0.8990
AT4G22240			Plastid-lipid associated prote...		Lus10014790 [exp]	3.7	0.8974
AT1G08250		AtADT6, ADT6	Arabidopsis thaliana arogenate...		Lus10019526 [exp]	4.6	0.9114
AT4G32020			unknown protein		Lus10005344 [exp]	5.1	0.9125
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10016599 [exp]	7.5	0.9048
AT2G43090			Aconitase/3-isopropylmalate de...		Lus10007804 [exp]	7.7	0.8908
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Lus10015496 [exp]	8.5	0.8945
AT3G25780		AOC3, AOC2	allene oxide cyclase 3 (.1)		Lus10017571 [exp]	9.0	0.8925

Compare expression of checked genes

Lus10023213 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.