Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26040 216 / 6e-65 HXXXD-type acyl-transferase family protein (.1) AT3G30280 182 / 3e-52 HXXXD-type acyl-transferase family protein (.1) AT1G24420 178 / 9e-51 HXXXD-type acyl-transferase family protein (.1) AT5G47950 177 / 1e-50 HXXXD-type acyl-transferase family protein (.1) AT4G15390 172 / 3e-48 HXXXD-type acyl-transferase family protein (.1) AT1G24430 166 / 4e-46 HXXXD-type acyl-transferase family protein (.1) AT5G47980 160 / 6e-44 HXXXD-type acyl-transferase family protein (.1) AT5G23970 149 / 4e-40 HXXXD-type acyl-transferase family protein (.1) AT4G15400 120 / 9e-30 HXXXD-type acyl-transferase family protein (.1) AT2G19070 93 / 4e-20 SHT spermidine hydroxycinnamoyl transferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013231 [exp] 212 / 3e-63 AT3G26040 291 / 5e-94 HXXXD-type acyl-transferase family protein (.1) Lus10030751 [exp] 202 / 1e-59 AT3G26040 297 / 2e-96 HXXXD-type acyl-transferase family protein (.1) Lus10036929 [exp] 183 / 6e-51 AT3G26040 319 / 1e-102 HXXXD-type acyl-transferase family protein (.1) Lus10036819 [exp] 168 / 9e-47 AT3G26040 256 / 1e-80 HXXXD-type acyl-transferase family protein (.1) Lus10042433 [exp] 167 / 2e-46 AT3G26040 249 / 8e-78 HXXXD-type acyl-transferase family protein (.1) Lus10019183 [exp] 155 / 4e-42 AT3G26040 265 / 3e-84 HXXXD-type acyl-transferase family protein (.1) Lus10017925 [exp] 153 / 4e-41 AT3G26040 264 / 1e-83 HXXXD-type acyl-transferase family protein (.1) Lus10028813 [exp] 150 / 2e-40 AT1G24430 218 / 3e-66 HXXXD-type acyl-transferase family protein (.1) Lus10025522 [exp] 150 / 4e-40 AT3G26040 236 / 9e-73 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G056300 [exp] 224 / 6e-68 AT3G26040 347 / 4e-116 HXXXD-type acyl-transferase family protein (.1) Potri.010G056400 [exp] 223 / 8e-68 AT3G26040 354 / 5e-119 HXXXD-type acyl-transferase family protein (.1) Potri.010G056450 [exp] 223 / 2e-67 AT3G26040 350 / 3e-117 HXXXD-type acyl-transferase family protein (.1) Potri.002G010700 [exp] 214 / 3e-64 AT3G26040 306 / 3e-100 HXXXD-type acyl-transferase family protein (.1) Potri.008G180400 [exp] 201 / 4e-59 AT3G26040 383 / 4e-130 HXXXD-type acyl-transferase family protein (.1) Potri.010G054100 [exp] 198 / 4e-58 AT3G26040 397 / 1e-135 HXXXD-type acyl-transferase family protein (.1) Potri.010G054002 [exp] 194 / 9e-57 AT1G24430 426 / 3e-147 HXXXD-type acyl-transferase family protein (.1) Potri.010G053800 [exp] 192 / 3e-56 AT1G24430 425 / 6e-147 HXXXD-type acyl-transferase family protein (.1) Potri.017G029300 [exp] 186 / 8e-54 AT1G24430 252 / 3e-79 HXXXD-type acyl-transferase family protein (.1) Potri.005G250500 [exp] 185 / 2e-53 AT3G26040 304 / 3e-99 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10023214 pacid=23181086 polypeptide=Lus10023214 locus=Lus10023214.g ID=Lus10023214.BGIv1.0 annot-version=v1.0 ATGGCAACAAAAGCAGTAAAAATTGAAATGATCTCCAAGCAATTTGTTAAGCCATCTTTAGCAACACCACCGGAGAAGTCGTCGCTAAAACTCTCAATAG TCGACGAGCTCAACTATGTAATGTCCACGCCGTTAGTCCTCTTCTACCGGGCTACAAACATCGGTCCCCAAGATGACGTCGTTTTGTATCTCGACCGCAA GTCCCGCATCCTCAAATCTTCCCTAGCCGACACCCTCAACCTCTACTATCCATACGCTGGCGTCCTTAGAGGCGACAATTTGATCGAATGCAACGACACC GGCATTGAGTACGTCGAGGCCAGCGTCACCGGAACACTGGCCGAGGTCGTGTTCCAGCACCCAGACCTCGAACTCCTGGAGAATTTCCTCCTGGTCGAGG ATCTGAATGCCCAGCGCTATGTCGGTGCCAAGGTCCAGACCACGACGTTCTCTTGTGGCGGTCTGGCGGTGGCGATCACCCTGACCCACAAAATTGGCGA CGGCGCGTCTCTCCTCACTTTCCTCCAGGCATGGGCCGCCGCCACGGTGGCGAGGACGAAATCCGCGCCAATTCCACCGGAGGTTCATCCGGTGTTTGCG GCGGATTCCGTCGTGGTGTCTTCTAGCGACGTGGATGTGGCGGTGCCGAAGCCCCCGCCAGGGAGCAGAGACAAGGTCCGGACCGTGCTGAGGCGGTTCG TGTTCGGGTCAGTTCAAATTGAACGGATACGGACTACATGTGCCAGTGAGGCGGTTAAACGGCCGAGCCGGGTCGAGTCTGTTACTGCCGTCCTTTGGAG GGCTATGATGAAAGTTAACAAAGTGAAATGTTCCCTTGTCAGAGATAAGACTCAAAAGGAGTCCATCCTAGTCCACGCTACGAATTGGCGGCCACGGTAC AACCCACCACTACCAACGAACCTAGTGGGCAACCTCTCAGGGAAAAGCATATGTCGTGCTCCGCAAGGAAGCCACGTCATCGAAGACCTGAAAACCCTAG TCGCTTACCAGAGAGCCGCACTGCTCGAATCCAACAAGCCTCTGGCAAAGGCGAGAGTCGATCGACAACAAGACGTCGAGACAATCGTCAACTTCGCTAA CGAGTTCAAACAGTTGCACGGAAGGGATGACGTGGACCTCTATAGCTTCAGCAGCCTGCTGACGTTCGAGTTCCACGACGTGGATTTCGGGTGGGGAAAA CCGGGTTGGGTCACGTTCACGAATTTGATACTGAAGCAGTTCGTTCTGTTCCTTGATGACGTGGAGACCAATGGAATTCAGGTTATGGTGTCGGTGTCCG AAGACGCTGCGGATTTGTTGGAGAATGAGTTGGTTGGGTTTGCCGAGCTGAATCCTCCTGTCGGGATGGCATCATACTGCTCGCCTTCTTCGATTGTTAT GTCGCGCATTTAA
AA sequence Show only first row Show all	>Lus10023214 pacid=23181086 polypeptide=Lus10023214 locus=Lus10023214.g ID=Lus10023214.BGIv1.0 annot-version=v1.0 MATKAVKIEMISKQFVKPSLATPPEKSSLKLSIVDELNYVMSTPLVLFYRATNIGPQDDVVLYLDRKSRILKSSLADTLNLYYPYAGVLRGDNLIECNDT GIEYVEASVTGTLAEVVFQHPDLELLENFLLVEDLNAQRYVGAKVQTTTFSCGGLAVAITLTHKIGDGASLLTFLQAWAAATVARTKSAPIPPEVHPVFA ADSVVVSSSDVDVAVPKPPPGSRDKVRTVLRRFVFGSVQIERIRTTCASEAVKRPSRVESVTAVLWRAMMKVNKVKCSLVRDKTQKESILVHATNWRPRY NPPLPTNLVGNLSGKSICRAPQGSHVIEDLKTLVAYQRAALLESNKPLAKARVDRQQDVETIVNFANEFKQLHGRDDVDLYSFSSLLTFEFHDVDFGWGK PGWVTFTNLILKQFVLFLDDVETNGIQVMVSVSEDAADLLENELVGFAELNPPVGMASYCSPSSIVMSRI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10023214 [exp]	0	1

Compare expression of checked genes

Lus10023214 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.