Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64620 45 / 5e-06 ATC/VIF2, C/VIF2 cell wall / vacuolar inhibitor of fructosidase 2 (.1) AT3G17230 42 / 0.0001 invertase/pectin methylesterase inhibitor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008892 [exp] 252 / 2e-86 AT1G47960 48 / 6e-07 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10017346 [exp] 47 / 9e-07 AT3G17220 79 / 8e-19 pectin methylesterase inhibitor 2 (.1) Lus10000822 [exp] 39 / 0.0009 AT1G47960 113 / 1e-31 cell wall / vacuolar inhibitor of fructosidase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G134900 [exp] 44 / 2e-05 AT5G64620 76 / 2e-17 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Potri.005G007100 [exp] 42 / 3e-05 AT1G09360 85 / 6e-21 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.001G127500 [exp] 41 / 0.0001 AT4G02250 98 / 3e-26 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10023215 pacid=23180959 polypeptide=Lus10023215 locus=Lus10023215.g ID=Lus10023215.BGIv1.0 annot-version=v1.0 ATGGCTAGCTCTCTTTCAATCACTATTCTTATACTATCCCTAGCGATGATCAATCCTTCGTCAGGGTTCCGCTACACGCCCCAAGACGGAACGCTCGTAG ACAAAATATGTCGAGATGCAAATGTCCAGAGGTTCTATGACTTTTGTGCAGAACTGTTCCACTCAGACCCCAGAGGTCCGACATCAGACCTCAAGGGTCT GGTCAAGATCGCGTTGGAGAAGTCGGCATTGACAGTGATGCGCTCGCTAGTGTCCATGGACGACGCAGCCAGGTTAGGGGTGGGGAAAACAAACGACACT GCCTATGCCAATCTCATGCAGTGCTCCGACCGGTATGGCCAGATCATCTACGACGTCTCTGAAGCGTTTAAATCGTCAAAAAATGGAGATTTTAATGCTG TGGACAACAGTGCCCGAGCTATAATCGGGCAGACGAACGGATGCCTAAATGGGTTCGTGGGACCATGGGACGCTTCGGATTCTGCTAGAAAGTTGCATAA CTTGGCCGTTATTGTAGCGGTCACTGCTAGTTTGTCTGGCTCGTAG
AA sequence Show only first row Show all	>Lus10023215 pacid=23180959 polypeptide=Lus10023215 locus=Lus10023215.g ID=Lus10023215.BGIv1.0 annot-version=v1.0 MASSLSITILILSLAMINPSSGFRYTPQDGTLVDKICRDANVQRFYDFCAELFHSDPRGPTSDLKGLVKIALEKSALTVMRSLVSMDDAARLGVGKTNDT AYANLMQCSDRYGQIIYDVSEAFKSSKNGDFNAVDNSARAIIGQTNGCLNGFVGPWDASDSARKLHNLAVIVAVTASLSGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10023215 [exp]	0	1
AT3G16180			Major facilitator superfamily ...		Lus10009506 [exp]	1.4	1.0000
					Lus10033149 [exp]	2.0	1.0000
AT3G14040			Pectin lyase-like superfamily ...		Lus10023364 [exp]	3.0	1.0000
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10003281 [exp]	3.9	1.0000
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10027028 [exp]	4.9	1.0000
AT1G29430			SAUR-like auxin-responsive pro...		Lus10020441 [exp]	4.9	1.0000
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Lus10005213 [exp]	5.2	0.9900
AT4G30030			Eukaryotic aspartyl protease f...		Lus10011612 [exp]	5.3	0.9333
AT3G24140	bHLH	bHLH097, FMA	FAMA, basic helix-loop-helix (...		Lus10007138 [exp]	5.5	0.9823
AT1G21880		LYM1	lysm domain GPI-anchored prote...		Lus10006200 [exp]	6.0	1.0000

Compare expression of checked genes

Lus10023215 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.