Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23810 310 / 1e-106 TET8 tetraspanin8 (.1) AT4G28050 302 / 1e-103 TET7 tetraspanin7 (.1) AT4G30430 267 / 1e-89 TET9 tetraspanin9 (.1) AT3G45600 221 / 1e-71 TET3 tetraspanin3 (.1) AT5G60220 194 / 3e-60 TET4 tetraspanin4 (.1) AT3G12090 191 / 1e-59 TET6 tetraspanin6 (.1) AT1G18520 187 / 2e-58 TET11 tetraspanin11 (.1) AT2G19580 181 / 4e-56 TET2 tetraspanin2 (.1) AT5G46700 181 / 4e-56 TRN2, TET1 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) AT1G63260 176 / 5e-54 TET10 tetraspanin10 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008891 [exp] 442 / 9e-159 AT2G23810 377 / 5e-133 tetraspanin8 (.1) Lus10019965 [exp] 401 / 2e-142 AT2G23810 376 / 1e-132 tetraspanin8 (.1) Lus10015494 [exp] 396 / 2e-140 AT2G23810 370 / 2e-130 tetraspanin8 (.1) Lus10038473 [exp] 234 / 1e-76 AT3G45600 446 / 9e-160 tetraspanin3 (.1) Lus10008563 [exp] 213 / 2e-68 AT2G19580 411 / 1e-146 tetraspanin2 (.1) Lus10017336 [exp] 209 / 6e-67 AT5G46700 389 / 5e-138 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) Lus10001668 [exp] 202 / 4e-64 AT5G46700 384 / 8e-136 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) Lus10023338 [exp] 174 / 8e-54 AT3G45600 347 / 1e-121 tetraspanin3 (.1) Lus10038964 [exp] 172 / 5e-52 AT4G28050 203 / 2e-64 tetraspanin7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G099800 [exp] 361 / 9e-127 AT2G23810 322 / 3e-111 tetraspanin8 (.1) Potri.006G177900 [exp] 357 / 4e-125 AT2G23810 317 / 4e-109 tetraspanin8 (.1) Potri.009G015100 [exp] 246 / 4e-81 AT3G45600 388 / 7e-137 tetraspanin3 (.1) Potri.003G093000 [exp] 216 / 1e-69 AT5G46700 369 / 4e-130 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) Potri.006G150400 [exp] 209 / 3e-67 AT2G19580 367 / 5e-129 tetraspanin2 (.1) Potri.010G220300 [exp] 207 / 3e-66 AT3G12090 399 / 2e-141 tetraspanin6 (.1) Potri.008G041600 [exp] 207 / 7e-66 AT3G12090 397 / 2e-140 tetraspanin6 (.1) Potri.015G055700 [exp] 199 / 7e-63 AT1G18520 196 / 6e-62 tetraspanin11 (.1) Potri.001G141400 [exp] 196 / 7e-62 AT5G46700 367 / 3e-129 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) Potri.001G107200 [exp] 178 / 7e-55 AT1G63260 416 / 1e-148 tetraspanin10 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0347 [flax] [poplar] Tetraspannin PF00335 [flax] [poplar] Tetraspanin Tetraspanin family
Representative CDS sequence Show only first row Show all	>Lus10023216 pacid=23180923 polypeptide=Lus10023216 locus=Lus10023216.g ID=Lus10023216.BGIv1.0 annot-version=v1.0 ATGTTCCGTCTAAGCAACAACCTGATCGGAATCCTGAACTTCATCACCTTCCTCCTCTCCGTCCCGATCATCTGGGCCGGAGTCTGGCTCCGCAACCACG GCAGCTCCGAATGCGAGCGGTTCCTCGACACTCCGGTCATCGTCCTCGGCGTCTTCCTCATGCTCGTCTCCATCGCCGGGCTCGTCGGCGCTTGCTGCAA GAACTCCTGCCTCCTCTGGATCTACCTCGTCGTCATGTTCCTGCTCATCGTCCTGCTATTCTGCTTCACGATCTTCGCCTTCATCGTCACCAACAAAGGA GCCGGGAAAGTCCTGTCCAACCGCGGGTATAAAGAGTACGAGCTGGGCGATTACTCCAATTGGCTTCAGAAGCGTGTGACTAGCGAGAAGAATTGGAGGA AGATCAGGAGCTGTTTGATTGAGGCGAAAGTCTGCTCCAAGTTCAACCAGAGTTATGTGTCTGATACCGTGGAGCAGTTGTATACAGAGCGATTGTCTGC TCTTCAGTCCGGGTGCTGCAAGCCGTCGGATGAATGTGGATTTACGTACGTGAATCCAACGACATGGACCAATACCGGGACGAACTCGAGCAACCCTGAC TGTGGAGCTTGGGATAACAAGCAGGATGTTCTGTGCTTCAACTGCAACTCGTGCAAGGCTGGTCTGCTCGATAACCTGAAGCGAGACTGGAAGCGAGTGG CGATTGTGAATATTATCTTCCTCATTGTGCTGATCGTTGTTTACTCGGTTGGTTGCTGTGCTTTCAGGAACAATAGGAGGGACAACTCTTATCCTTCTGG GTGGAGGAAGGCTTAG
AA sequence Show only first row Show all	>Lus10023216 pacid=23180923 polypeptide=Lus10023216 locus=Lus10023216.g ID=Lus10023216.BGIv1.0 annot-version=v1.0 MFRLSNNLIGILNFITFLLSVPIIWAGVWLRNHGSSECERFLDTPVIVLGVFLMLVSIAGLVGACCKNSCLLWIYLVVMFLLIVLLFCFTIFAFIVTNKG AGKVLSNRGYKEYELGDYSNWLQKRVTSEKNWRKIRSCLIEAKVCSKFNQSYVSDTVEQLYTERLSALQSGCCKPSDECGFTYVNPTTWTNTGTNSSNPD CGAWDNKQDVLCFNCNSCKAGLLDNLKRDWKRVAIVNIIFLIVLIVVYSVGCCAFRNNRRDNSYPSGWRKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23810		TET8	tetraspanin8 (.1)		Lus10023216 [exp]	0	1
AT1G32170		XTH30, XTR4	xyloglucan endotransglycosylas...		Lus10010427 [exp]	1.0	0.9554
AT4G23340			2-oxoglutarate (2OG) and Fe(II...		Lus10009663 [exp]	2.4	0.9388
AT3G48410			alpha/beta-Hydrolases superfam...		Lus10043449 [exp]	2.8	0.9448
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10022065 [exp]	4.6	0.9332
AT5G03700			D-mannose binding lectin prote...		Lus10023868 [exp]	6.3	0.9388
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10042611 [exp]	6.3	0.9291
AT3G22800			Leucine-rich repeat (LRR) fami...		Lus10006611 [exp]	8.5	0.9158
AT3G29034			unknown protein		Lus10033010 [exp]	9.5	0.9204
AT2G38300	GARP		myb-like HTH transcriptional r...		Lus10002207 [exp]	9.8	0.9355
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Lus10010203 [exp]	9.8	0.9197

Compare expression of checked genes

Lus10023216 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.