Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G34940 52 / 6e-08 ATGUS3 glucuronidase 3 (.1.2.3) AT5G61250 40 / 0.0007 ATGUS1 glucuronidase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001922 [exp] 100 / 2e-27 AT5G34940 82 / 3e-19 glucuronidase 3 (.1.2.3) Lus10038109 [exp] 44 / 2e-05 AT5G34940 678 / 0.0 glucuronidase 3 (.1.2.3) Lus10008038 [exp] 44 / 3e-05 AT5G34940 671 / 0.0 glucuronidase 3 (.1.2.3) Lus10001952 [exp] 44 / 4e-05 AT5G34940 149 / 9e-42 glucuronidase 3 (.1.2.3) Lus10003468 [exp] 40 / 0.0007 AT5G07830 691 / 0.0 glucuronidase 2 (.1) Lus10015737 [exp] 40 / 0.0008 AT5G07830 690 / 0.0 glucuronidase 2 (.1) Lus10004664 [exp] 40 / 0.0009 AT5G07830 519 / 0.0 glucuronidase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G024200 [exp] 62 / 1e-11 AT5G34940 664 / 0.0 glucuronidase 3 (.1.2.3) Potri.006G062200 [exp] 49 / 7e-07 AT5G34940 729 / 0.0 glucuronidase 3 (.1.2.3) Potri.018G121500 [exp] 45 / 9e-06 AT5G34940 734 / 0.0 glucuronidase 3 (.1.2.3) Potri.015G049100 [exp] 40 / 0.0005 AT5G07830 731 / 0.0 glucuronidase 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023219 pacid=23180976 polypeptide=Lus10023219 locus=Lus10023219.g ID=Lus10023219.BGIv1.0 annot-version=v1.0 ATGGAGAGATCAGATTCCAAGGTCGATGCAATTTCAAGAGAACAATATTATTTAATTGTTAACGGTGGCGATCTACACAGTAGGACTGCACTTTTGAACG GGAAAGCACAGGCGGTTGATACTTATATTGAAACTATACCTCAGTTGAAACCTGGTCGGATCAGACTGTCGGACCTAACAACTGTTACTTCGTTCTCTAT AATGCTTATGCGTATTGCCGACATGACAGTTCCAGCCTATGGCCGCCGTCGTCGACCACTATTCCCACGGTCTCTGGACGACTATCGTAGCCATTATCAT AACCATTTCGCTCCTACTCTCATCATCGCACGTGAAGTTTGTGCCAAATCACCGTGGGAGAGAGTATGCTGCGCTTACGAGAAGGCGAACACCGTGAAAA TGTACTTCCTCAATGATCCCGTGGCGGGACACAAAAACTGCCGCCAATGTGCCGACATAATGGTCGAGGCGATCGACAAGATAATCCACGCCTCCGACAA ATGGCAAGCCGAGGATTACGCGCAGCGCAGTCTTACGTTGAGTTGGAGGATGACATGA
AA sequence Show only first row Show all	>Lus10023219 pacid=23180976 polypeptide=Lus10023219 locus=Lus10023219.g ID=Lus10023219.BGIv1.0 annot-version=v1.0 MERSDSKVDAISREQYYLIVNGGDLHSRTALLNGKAQAVDTYIETIPQLKPGRIRLSDLTTVTSFSIMLMRIADMTVPAYGRRRRPLFPRSLDDYRSHYH NHFAPTLIIAREVCAKSPWERVCCAYEKANTVKMYFLNDPVAGHKNCRQCADIMVEAIDKIIHASDKWQAEDYAQRSLTLSWRMT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G34940		ATGUS3	glucuronidase 3 (.1.2.3)		Lus10023219 [exp]	0	1

Compare expression of checked genes

Lus10023219 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.