Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23750 447 / 3e-142 Leucine-rich repeat protein kinase family protein (.1) AT1G66150 403 / 2e-125 TMK1 transmembrane kinase 1 (.1) AT2G01820 398 / 2e-123 CYCJ18 Leucine-rich repeat protein kinase family protein (.1) AT1G24650 345 / 4e-104 Leucine-rich repeat protein kinase family protein (.1) AT5G15080 213 / 4e-60 Protein kinase superfamily protein (.1) AT3G28690 206 / 8e-59 Protein kinase superfamily protein (.1.2.3) AT3G01300 209 / 1e-58 Protein kinase superfamily protein (.1) AT5G38560 211 / 1e-57 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT3G55450 201 / 5e-57 PBL1 PBS1-like 1 (.1.2) AT4G32710 201 / 8e-57 PERK14 proline-rich extensin-like receptor kinase 14, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039038 [exp] 407 / 1e-126 AT1G66150 1356 / 0.0 transmembrane kinase 1 (.1) Lus10027336 [exp] 405 / 8e-126 AT1G66150 1348 / 0.0 transmembrane kinase 1 (.1) Lus10003807 [exp] 397 / 6e-123 AT1G66150 1221 / 0.0 transmembrane kinase 1 (.1) Lus10010472 [exp] 385 / 1e-119 AT1G66150 1067 / 0.0 transmembrane kinase 1 (.1) Lus10034432 [exp] 374 / 2e-114 AT1G66150 979 / 0.0 transmembrane kinase 1 (.1) Lus10019131 [exp] 372 / 6e-114 AT1G66150 981 / 0.0 transmembrane kinase 1 (.1) Lus10031944 [exp] 372 / 9e-114 AT2G01820 1008 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10021275 [exp] 363 / 1e-110 AT1G66150 804 / 0.0 transmembrane kinase 1 (.1) Lus10016952 [exp] 355 / 2e-107 AT1G66150 806 / 0.0 transmembrane kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G049200 [exp] 856 / 0 AT3G23750 589 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G141000 [exp] 475 / 8e-153 AT3G23750 650 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G035900 [exp] 473 / 7e-152 AT3G23750 1044 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G073900 [exp] 462 / 7e-148 AT3G23750 630 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G103000 [exp] 403 / 1e-125 AT2G01820 1050 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G084000 [exp] 403 / 2e-125 AT1G66150 730 / 0.0 transmembrane kinase 1 (.1) Potri.008G137801 [exp] 402 / 6e-125 AT1G66150 1101 / 0.0 transmembrane kinase 1 (.1) Potri.017G134900 [exp] 400 / 3e-124 AT1G66150 1333 / 0.0 transmembrane kinase 1 (.1) Potri.006G203500 [exp] 373 / 4e-114 AT2G01820 528 / 5e-173 Leucine-rich repeat protein kinase family protein (.1) Potri.001G217700 [exp] 368 / 4e-112 AT1G66150 724 / 0.0 transmembrane kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10023220 pacid=23181095 polypeptide=Lus10023220 locus=Lus10023220.g ID=Lus10023220.BGIv1.0 annot-version=v1.0 ATGAACAACTTCTCTCTGTTTTTCCTCCTCCTCCTCATCTTCCCTGCCGCCACAACTTCCGACGACGCCACCGTCCTCCTGAAACTCGCCAAATCCCTAA CTCCCTTACCACCAACCTGGTCCACCACTTCCTCCGCCGCCTTCTGCCGCTGGAAAGGCGTCCAATGCGACTCAACTACCACCGCCAAATCAGTCACCTC CATCACAATCTCAAACCTCAACCTCGACGGAATCCTCCCACCGGAAATATCCACCCTCGCCGAACTCCGTAACCTCGCCGTCCAGCACAACAACCTCCGC GGCCCGATCCCTTCCCTCTCCAAGCTCTCAAATCTCCAGTCAATTTTCCTCGACAACAACAATTTCACATCCATTCCTCCCGGATTCTTCGCGGGCCTCG TCAGTCTCCAAACGTTCAGCATCAGTAACAACCCCAATCTCCCTCCATGGCAAATCCCGAGTCGAGATCTATCAACTTGCTCTTCGCTCGTCTCCTTCAT CGCTCACGGCGCCGGCCTGTTTGGATCTATTCCGGACGACATTTTTGGCTCATTGGTCAGTCTTCAGAACTTGAAACTTAGCTACAACAACCTCACCGGT ACGTTACCACTGTCGTTAGCGAATTCCTCTGTTCAGAACTTGTATTTGAACAATCAGGAGATAGGCCTCTCTGGCACCCTCCAGGTGCTCGACGAAATGC CTCAGTTGTCTGTAGCTTGGGTTCATGATAATCAATTCACTGGTCCGATACCGGATCTCTCCAAATGTGAAAACCTATTCGATTTGCAACTCCGAGACAA TCAGCTCACTGGTATAGTCCCTGTGAAATCATTATCCTCACTCTCTAGATTGAGCACTATCTCCATTTCCAACAACAACCTTCAAGGTCCGGTTCCTGTG TTTCCTTCTAGAATCAAAGTTGTGAACAGTGGAGCAAACAATTTCTGTGTATCTTCTCCTGGTGTTGACTGTGCTCCACAAGTGAATGCCCTTCTTCAAG TTGCTGAAGGTTTCGGTTATCCGATAAGCCTCTCCGAGAAATGGCAAGGGAATGATCCTTGCTTGGGTCGGTGGTCGTTTGTAACTTGCGATCCACGGAA GGAGAATGTCACCGCTGTGAACTTGGGGAAGCAAGGGTTTGCTGGACGGATTTCGCCTGCTTTCGCTAAGCTTTCTTCTTTGCAGTTTGTGTACCTTAAC GACAACAACTTAACAGGGCCAATTCCTGATATCTTCACAAGTTTGTCACAGCTTAAAGTGGTTGATCTTTCTAACAACAACCTATCAGGAAAGATACCAG TTTTCCCACCTTCTGTAAAGCTCACTCTTTATCCAGGGAATCGATTTCTAGGACGAACTGATGTTGATACTAGTGCTGCTAATGGAGCAGGATCTTTACC ATCATCATCATCATCTTCGTCATCATCATCAGAAGGGGTGAAAGGACGTTCCTTTAAGCTATCAGTGGGTGTGATTGCTGCCATAGTTATAGTATTGGTA TTCCTGGTTGTTGCTCTTTTGATATTCTTGATGCTTAGGTATAAGAATAAGAATAAGAAGAAGAAAGAAGAGGAAAAGAATGGAGATTTGGAGGGGAAGT TCATGTTTCGGGAAGGAAATAAGAATGCAGCTGAATGGTACATCACTGCTGATGAATTACATGGAAGTAGCCCCATAAAAGGGTCAAAGGTGATGGAGGA TCTTAATCTTAGTGCTTCCATGTCTATAGAGGTACTTAGGAAAGTTACAGACAATTTCTCAGAGAAGAAAATCATAGGGAAAGGTGGGTTTGGGGTGGTT TACAAAGGGGACCTCCACGATGGCAGTCGAGTAGCTGTAAAAAGGATGGAGTCAGGAGTTCTGGGCATCAAAGGAATCAAGGAGTTCGAAGCCGAGATCG GGGTTTTGTCGAATGTGAGGCATAAGCATTTGGTGGCGTTTCTTGGTTACTGCATCAACGAGAGGGAGAGGCTTTTGGTGTATGAGTATATGCCGCAGGG GACTTTGGGGCAGCATTTGTTTGAATGGAGGAATAGGGGGATTTTGCCGCTGACGTGGAAGCAGAGGCTTACGATCGCGCTTGATGTAGCTAGAGGGGTT GAGTATCTGCATAGCTTGGCTCAGCAGAGTTTTATACATAGAGATTTGAAGCCTTCGAACATTTTGCTGGGAGATGATATGAGGGCTAAGGTGTCTGATT TTGGCCTGGTGAAACATGCTAGTGATGGGAAGCAGTCCATGGAGACGAGGTTGGCTGGCACTTTTGGCTATTTAGCACCCGAGTATGCTACTACAGGAAG AGTATCAAGAAAAGTGGACGTCTACGCATTCGGAGTGATTCTCATGGAGATGATAACAGGGAGAAAAGCTCTGGACGAGTCAACCGACGACGAGACAGGT CATCTAGTGACATGGTTCCGTGTGATCGGTAACCAGAACATCGAATCGGCTATGGACATAACTCTCACAATGCACCAACAAGACGACCAAGATTCCCCGA AGATCGAGGCAGTTCTCAAGGTGGCAGAGCTGGCCGGACACTGCACGGCAGGGGAGCCAAGCCAGAGGCCTGAAATGGGACACGCGGTGAATGTGTTGGC GCCATTGGTTGAGCAATGGACGGCGCCTAGTAATTTGCAGCAACGTGGAAATGATCACGCCGGAGAATTGGCCGGCGGTGGTGGTCAGGCTGCGGTGGAC ATGTACAAAAGTCTGCCGGAGGTTCTGCAAAGGTGGCGAGCCGATGAAGATGTTTCAACCACGTTTACGCATGATTCGGCGGCACCTCGTGCTCCCCAGT CTGATGGCTCTGAACAAAACCCATCGTTTGAAGGCAGCCGCCATGTTGACTGA
AA sequence Show only first row Show all	>Lus10023220 pacid=23181095 polypeptide=Lus10023220 locus=Lus10023220.g ID=Lus10023220.BGIv1.0 annot-version=v1.0 MNNFSLFFLLLLIFPAATTSDDATVLLKLAKSLTPLPPTWSTTSSAAFCRWKGVQCDSTTTAKSVTSITISNLNLDGILPPEISTLAELRNLAVQHNNLR GPIPSLSKLSNLQSIFLDNNNFTSIPPGFFAGLVSLQTFSISNNPNLPPWQIPSRDLSTCSSLVSFIAHGAGLFGSIPDDIFGSLVSLQNLKLSYNNLTG TLPLSLANSSVQNLYLNNQEIGLSGTLQVLDEMPQLSVAWVHDNQFTGPIPDLSKCENLFDLQLRDNQLTGIVPVKSLSSLSRLSTISISNNNLQGPVPV FPSRIKVVNSGANNFCVSSPGVDCAPQVNALLQVAEGFGYPISLSEKWQGNDPCLGRWSFVTCDPRKENVTAVNLGKQGFAGRISPAFAKLSSLQFVYLN DNNLTGPIPDIFTSLSQLKVVDLSNNNLSGKIPVFPPSVKLTLYPGNRFLGRTDVDTSAANGAGSLPSSSSSSSSSSEGVKGRSFKLSVGVIAAIVIVLV FLVVALLIFLMLRYKNKNKKKKEEEKNGDLEGKFMFREGNKNAAEWYITADELHGSSPIKGSKVMEDLNLSASMSIEVLRKVTDNFSEKKIIGKGGFGVV YKGDLHDGSRVAVKRMESGVLGIKGIKEFEAEIGVLSNVRHKHLVAFLGYCINERERLLVYEYMPQGTLGQHLFEWRNRGILPLTWKQRLTIALDVARGV EYLHSLAQQSFIHRDLKPSNILLGDDMRAKVSDFGLVKHASDGKQSMETRLAGTFGYLAPEYATTGRVSRKVDVYAFGVILMEMITGRKALDESTDDETG HLVTWFRVIGNQNIESAMDITLTMHQQDDQDSPKIEAVLKVAELAGHCTAGEPSQRPEMGHAVNVLAPLVEQWTAPSNLQQRGNDHAGELAGGGGQAAVD MYKSLPEVLQRWRADEDVSTTFTHDSAAPRAPQSDGSEQNPSFEGSRHVD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23750			Leucine-rich repeat protein ki...		Lus10023220 [exp]	0	1
					Lus10037765 [exp]	6.2	0.7676
AT3G10080			RmlC-like cupins superfamily p...		Lus10020631 [exp]	14.0	0.7491
AT4G08850			Leucine-rich repeat receptor-l...		Lus10005015 [exp]	14.7	0.6703
					Lus10027332 [exp]	21.7	0.6733
AT1G36390			Co-chaperone GrpE family prote...		Lus10042696 [exp]	26.0	0.7161
AT3G48250		BIR6	Buthionine sulfoximine-insensi...		Lus10019474 [exp]	27.0	0.7507
AT1G80660		AHA9	H\(+\)-ATPase 9, H\(+\)-ATPase...		Lus10026093 [exp]	33.8	0.7216
AT1G64910			UDP-Glycosyltransferase superf...		Lus10002350 [exp]	34.8	0.6376
AT5G14580			polyribonucleotide nucleotidyl...		Lus10022250 [exp]	37.1	0.7303
AT3G22330		ATRH53, PMH2	putative mitochondrial RNA hel...		Lus10031012 [exp]	49.0	0.7233

Compare expression of checked genes

Lus10023220 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.