Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23730 367 / 3e-128 XTH16 xyloglucan endotransglucosylase/hydrolase 16 (.1) AT4G14130 365 / 7e-128 XTR7, XTH15 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) AT5G57560 322 / 8e-111 XTH22, TCH4 xyloglucan endotransglucosylase/hydrolase 22, Touch 4, Xyloglucan endotransglucosylase/hydrolase family protein (.1) AT5G57550 321 / 2e-110 XTR3, XTH25, EXGT-A5 xyloglucan endotransglycosylase 3, xyloglucan endotransglucosylase/hydrolase 25 (.1) AT4G30270 316 / 1e-108 XTH24, SEN4, BRU1, MERI-5, MERI5B SENESCENCE 4, meristem-5, MERISTEM 5, xyloglucan endotransglucosylase/hydrolase 24 (.1) AT4G25810 316 / 2e-108 XTH23, XTR6 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) AT2G18800 305 / 9e-104 ATXTH21, XTH21, XTR17 xyloglucan endotransglucosylase/hydrolase 21 (.1) AT5G57530 303 / 3e-103 AtXTH12, XTH12 xyloglucan endotransglucosylase/hydrolase 12 (.1) AT5G48070 298 / 2e-101 XTH20, ATXTH20 xyloglucan endotransglucosylase/hydrolase 20 (.1) AT5G57540 297 / 6e-101 AtXTH13, XTH13 xyloglucan endotransglucosylase/hydrolase 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008888 [exp] 406 / 5e-145 AT4G14130 283 / 1e-96 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Lus10028947 [exp] 375 / 2e-131 AT4G14130 437 / 2e-156 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Lus10008522 [exp] 360 / 1e-125 AT3G23730 430 / 2e-153 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10004723 [exp] 357 / 3e-124 AT3G23730 431 / 1e-153 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10021638 [exp] 347 / 1e-120 AT3G23730 413 / 7e-147 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10000678 [exp] 346 / 3e-120 AT3G23730 410 / 6e-146 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10010939 [exp] 327 / 2e-112 AT3G23730 384 / 2e-135 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10031393 [exp] 326 / 4e-112 AT3G23730 388 / 8e-137 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10010938 [exp] 323 / 3e-111 AT4G14130 386 / 3e-136 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G146100 [exp] 374 / 5e-131 AT3G23730 451 / 1e-161 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.002G236200 [exp] 362 / 2e-126 AT3G23730 436 / 1e-155 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.005G201250 [exp] 356 / 5e-124 AT4G14130 395 / 2e-139 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.005G201200 [exp] 356 / 5e-124 AT4G14130 405 / 2e-143 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.002G060500 [exp] 350 / 8e-122 AT4G14130 424 / 3e-151 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.011G077320 [exp] 348 / 1e-120 AT3G23730 386 / 7e-136 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.002G060400 [exp] 346 / 5e-120 AT4G14130 402 / 2e-142 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.018G095200 [exp] 333 / 4e-115 AT4G25810 414 / 3e-147 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.018G095100 [exp] 333 / 6e-115 AT4G25810 420 / 1e-149 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.011G077380 [exp] 331 / 4e-114 AT4G14130 345 / 2e-119 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00722 [flax] [poplar] Glyco_hydro_16 Glycosyl hydrolases family 16 CL0004 [flax] [poplar] Concanavalin PF06955 [flax] [poplar] XET_C Xyloglucan endo-transglycosylase (XET) C-terminus
Representative CDS sequence Show only first row Show all	>Lus10023221 pacid=23181016 polypeptide=Lus10023221 locus=Lus10023221.g ID=Lus10023221.BGIv1.0 annot-version=v1.0 ATGGGTTACCGGTTTTACAACTGGTTATTGTCATCACCCAATAACAATAGAAAGCATCAGCTTCGGACATTATTAGTTATGGTGATGATGCTGATGTCGA TGCAGAAAACAGCCGAAGGGGGGAATTTCAACGAGGACGTGGACCTGACGTGGGGTGGGGAGCGAGCACAAATCAAGGACGGAGGGAACCTGATCTCACT GTCCCTCGATCGGGACTCTGGATCAGGTTTCCAGTCCAAATCTGATTACATGTTCGCCAGGATTGATTTGCAGCTTAAACTAGTCCCCCGTGACGCTGCT GGCACCGTCACCGCCTATTACTTGTCATCACAAGGACCAATCCACGACGAAATCGACTTCGAATTTCTCGGAAACGTCAGCGGTCAGCCTTACACACTAC ACACCAACGTGTACACACACGGCCACGGCAACCGAGAGCAACAGTTCTTCCTCTGGTTTGATCCCACTAGAAACTTCCACACTTACTCCATCATCTGGAA GCCCCAACACATCATATTCTTGGTGGACCACATCCCGATAAGGGTGTTCAAGAATTTGCGGAAGTACGGGGTGCCATTCCCGAGGAAGCAGCCGATGAAG CTCTACTGCAGCATCTGGGATGCCGATGACTGGGCGACACGTGGTGGGTTGGTCAAGACCGACTGGTCAATGGCTCCCTTCACTTCCTACTTCCGTAACT TCCAAGCAACTCCGTACACCAACTTCGCCCACAACGGTCGGGGAAAGTTCAGGGAGGCTGGGGACCCGGATATCGATGCGTACGCGAGGAAGAGGCTCCG GTGGGTCGAGAAGTACTTCATGATCTATAACTACTGTACCGATGTCAACCGGTTCCAGGGCCGTCTCCCGCCTGAATGCAAACACTCTAGCGCACTATGA
AA sequence Show only first row Show all	>Lus10023221 pacid=23181016 polypeptide=Lus10023221 locus=Lus10023221.g ID=Lus10023221.BGIv1.0 annot-version=v1.0 MGYRFYNWLLSSPNNNRKHQLRTLLVMVMMLMSMQKTAEGGNFNEDVDLTWGGERAQIKDGGNLISLSLDRDSGSGFQSKSDYMFARIDLQLKLVPRDAA GTVTAYYLSSQGPIHDEIDFEFLGNVSGQPYTLHTNVYTHGHGNREQQFFLWFDPTRNFHTYSIIWKPQHIIFLVDHIPIRVFKNLRKYGVPFPRKQPMK LYCSIWDADDWATRGGLVKTDWSMAPFTSYFRNFQATPYTNFAHNGRGKFREAGDPDIDAYARKRLRWVEKYFMIYNYCTDVNRFQGRLPPECKHSSAL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10023221 [exp]	0	1
AT5G35750		AHK2	histidine kinase 2 (.1)		Lus10009736 [exp]	3.5	1.0000
AT1G07985			Expressed protein (.1)		Lus10029516 [exp]	3.5	1.0000
AT5G13620			unknown protein		Lus10017168 [exp]	5.5	1.0000
AT2G45200		ATGOS12, GOS12	golgi snare 12 (.1.2)		Lus10015880 [exp]	5.7	1.0000
					Lus10005378 [exp]	10.2	1.0000
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Lus10003277 [exp]	11.0	1.0000
AT2G13450			unknown protein		Lus10005336 [exp]	11.2	1.0000
AT3G49210			O-acyltransferase (WSD1-like) ...		Lus10022417 [exp]	11.7	1.0000
					Lus10015929 [exp]	11.8	1.0000
AT1G17260		AHA10	autoinhibited H\(+\)-ATPase is...		Lus10003924 [exp]	12.0	1.0000

Compare expression of checked genes

Lus10023221 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.