Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14000 328 / 2e-113 Putative methyltransferase family protein (.1) AT2G43320 132 / 2e-36 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008886 [exp] 470 / 2e-169 AT4G14000 300 / 2e-102 Putative methyltransferase family protein (.1) Lus10015953 [exp] 130 / 9e-36 AT2G43320 423 / 2e-149 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G321100 [exp] 371 / 3e-130 AT4G14000 350 / 8e-122 Putative methyltransferase family protein (.1) Potri.017G031700 [exp] 137 / 4e-38 AT2G43320 527 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.007G127300 [exp] 131 / 8e-36 AT2G43320 536 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.001G148200 [exp] 45 / 1e-05 AT5G44170 46 / 7e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.017G153900 [exp] 44 / 8e-05 AT1G73320 347 / 2e-120 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF10294 [flax] [poplar] Methyltransf_16 Lysine methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10023222 pacid=23181038 polypeptide=Lus10023222 locus=Lus10023222.g ID=Lus10023222.BGIv1.0 annot-version=v1.0 ATGGCGTTCGTAAACTCGGAATTCAAATTATTCTCATCTGGGAAAGGGTTCGATGAAACTCCTCCATCTCAGCCTCCTCCTCATCCTCTCCCGCCGTCAA TCGAAGTTCTCGCTTCGGAGAAAGCAGAGGTTGCTTCAACGGTGAAATGCTCGATGGAGCCGTTGGAGATAGATGATGGCCTCACTCTACTTAAGGGGAG GGTCCGTACTCAAGAGATTATGGGACTGCCCAACTCCGATTTGGTTCCTGGCGTGTATGAAGGGGGACTTAAGCTTTGGGAGGGTTCACTTGACCTTGTT AAAGCCCTCCGCACCCAGATTCGTAAGGGAGAATTGTCATTCAGTGGCAAGAAAGTTTTGGAGCTTGGATGCGGCCATGGCCTTCCTGGAATTTATGCTT GCCTAGAGGGGGCAATGGCTGTCCATTTCCAGGATTTCAACGTTGAGGTTCTCCGGTGCCTAACCATTCCTAATACAACTGTCAATCTGTCATCATCCGA GCCCATAGTTGAACCCGAAGTAAGATATTTCGCTGGTGACTGGAGCCAAATCCATCAATGTCTTCCTTTCGACTATGATGTTATACTAATGGCCGAGACA ATTTATGCCGTCTCTGCTCAACCAAGCCTCTACGAACTTGTCAAGAAGTGCTTGAAACGTCCCGGTGGAGTAGTATACATGTCTGCCAAGAAGTATTATT TCGGAGTTGGCGGTGGTACCCGCCAGTTTCTGTCTATGGTGGAGAAAGATGGTGTTATGGATACAAGCCTTGTGGCAGAAGTTGCTGATGGTTCTTCTAA TGTCCGGGAAGTTTGGAAGCTTTCTACGAAGAGTTAA
AA sequence Show only first row Show all	>Lus10023222 pacid=23181038 polypeptide=Lus10023222 locus=Lus10023222.g ID=Lus10023222.BGIv1.0 annot-version=v1.0 MAFVNSEFKLFSSGKGFDETPPSQPPPHPLPPSIEVLASEKAEVASTVKCSMEPLEIDDGLTLLKGRVRTQEIMGLPNSDLVPGVYEGGLKLWEGSLDLV KALRTQIRKGELSFSGKKVLELGCGHGLPGIYACLEGAMAVHFQDFNVEVLRCLTIPNTTVNLSSSEPIVEPEVRYFAGDWSQIHQCLPFDYDVILMAET IYAVSAQPSLYELVKKCLKRPGGVVYMSAKKYYFGVGGGTRQFLSMVEKDGVMDTSLVAEVADGSSNVREVWKLSTKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14000			Putative methyltransferase fam...		Lus10023222 [exp]	0	1
AT3G10670		ABCI6, ATNAP7	ATP-binding cassette I6, non-i...		Lus10043429 [exp]	7.9	0.6748
AT1G11340			S-locus lectin protein kinase ...		Lus10007601 [exp]	16.2	0.6533
AT2G20540		MEF21	mitochondrial editing factor ...		Lus10007684 [exp]	18.5	0.5402
AT4G12480		PEARLI 1 1, PEA...	EARLY ARABIDOPSIS ALUMINUM IND...		Lus10036494 [exp]	38.5	0.6297
AT5G13150		ATEXO70C1	exocyst subunit exo70 family p...		Lus10015757 [exp]	59.5	0.6146
AT4G12490			Bifunctional inhibitor/lipid-t...		Lus10024619 [exp]	115.6	0.5325

Compare expression of checked genes

Lus10023222 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.