Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23790 869 / 0 AAE16 acyl activating enzyme 16, AMP-dependent synthetase and ligase family protein (.1) AT4G14070 858 / 0 AAE15 acyl-activating enzyme 15 (.1) AT5G27600 186 / 7e-50 LACS7, ATLACS7 long-chain acyl-CoA synthetase 7 (.1) AT3G05970 177 / 1e-46 LACS6, ATLACS6 long-chain acyl-CoA synthetase 6 (.1) AT2G47240 142 / 3e-35 CER8, LACS1 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) AT1G49430 139 / 4e-34 LRD2, LACS2 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) AT2G04350 132 / 1e-31 LACS8 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) AT1G64400 129 / 8e-31 LACS3 long-chain acyl-CoA synthetase 3, AMP-dependent synthetase and ligase family protein (.1) AT4G11030 121 / 2e-28 AMP-dependent synthetase and ligase family protein (.1) AT4G23850 121 / 2e-28 LACS4 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008884 [exp] 1359 / 0 AT3G23790 977 / 0.0 acyl activating enzyme 16, AMP-dependent synthetase and ligase family protein (.1) Lus10004483 [exp] 180 / 1e-47 AT5G27600 1121 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10029918 [exp] 179 / 4e-47 AT5G27600 1122 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10010530 [exp] 175 / 8e-46 AT5G27600 1095 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10002454 [exp] 166 / 8e-43 AT5G27600 1088 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10012307 [exp] 144 / 1e-35 AT2G04350 1054 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) Lus10016083 [exp] 137 / 2e-33 AT2G04350 1057 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) Lus10032840 [exp] 137 / 2e-33 AT2G47240 961 / 0.0 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) Lus10002414 [exp] 132 / 9e-32 AT2G47240 932 / 0.0 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G060100 [exp] 978 / 0 AT3G23790 1024 / 0.0 acyl activating enzyme 16, AMP-dependent synthetase and ligase family protein (.1) Potri.001G321800 [exp] 933 / 0 AT3G23790 1016 / 0.0 acyl activating enzyme 16, AMP-dependent synthetase and ligase family protein (.1) Potri.013G021300 [exp] 189 / 5e-51 AT5G27600 1156 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Potri.010G090200 [exp] 171 / 2e-44 AT3G05970 1078 / 0.0 long-chain acyl-CoA synthetase 6 (.1) Potri.002G192400 [exp] 135 / 8e-33 AT2G47240 950 / 0.0 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) Potri.003G139700 [exp] 123 / 6e-29 AT4G23850 1094 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Potri.009G109900 [exp] 123 / 6e-29 AT1G49430 951 / 0.0 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) Potri.001G091900 [exp] 122 / 1e-28 AT4G23850 1101 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Potri.005G177500 [exp] 118 / 2e-27 AT1G77590 1058 / 0.0 long chain acyl-CoA synthetase 9 (.1) Potri.002G084100 [exp] 117 / 4e-27 AT1G77590 1079 / 0.0 long chain acyl-CoA synthetase 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10023224 pacid=23180922 polypeptide=Lus10023224 locus=Lus10023224.g ID=Lus10023224.BGIv1.0 annot-version=v1.0 ATGGATGTCGTCGGAGTGCTTTCTTCTCGCTGTTCGCCGCTCTCGCCGATGAGAACGGTTAAGAACTTTCCACTTTCAGCCTATGCTTTGAGCTCCTGCG ATCGGAGTTCTCGGATACTGCACTTCTTATCCCCTCTCGCTCTCGAGCTTTCCAGAGTTGCACGATTCGGCTGCAGTTCTATTTCACTTCGCCGATTCCG TGCGCACTGCGAGTTGAAGAAAGAGGAGTCGAAGATAAGGAGATGTTCACCGTTCCTCGAAAAGACGTTGCTGTCGGGATCTGGGTTGGGCTCTGACGAA TGGAGAGCTGTACCTGACATTTGGAGGTCGGCTGCAGAGAAATACGGGGATACAGTTGCACTGGTGGATCCATATCATCATCCGCCAACAAGTATGACTT ACAAAGAGGCTTGCCCCTGTGCTCTATTGATTAGACATGTGTCTGAGGTACCTGATGTTGCTTATATAACATCGCTGAATTTCACTCGTTGCTACAACAA AGTTTTGCGTGTTTCATTTATTTCTATTTTTGTGTCAACAGACCAAGGCACAATGGCCATGGGAGCCATTAATGTCGTTAGGGGATCAAGGTCAACAAGT GAGGAGCTACTACAGATCTATAACCACTCTGACAGTATTGCACTAGCTGTTGACAACCCTGAATTATTCAATCAAATCGCGGGAGCATTTTGTTCCAAGG CAACAATGAGGTTCATCATTGTGCTTTGGGGAGATAAATCGGAACTGAATTTTCCTGGAATAGAGGAGTTTCCGGTTTTTAGCTACCAAGAAATCATTGA TTTGGGACAAGAAAGCTACAAAGCGGTTTCTGTTGCCGAAAATACAGGATCTAAGTATATATACGAGACCATCAGTAGTGATGACACTGCTACACTTATG TATACGAGTGGAACCACAGGAAATCCAAAAGGTGTTATGCTTACGCACAAAAATCTCTTACACCAGATCAACAATTTGTGGGACATTGTACCTGCTTTAC CTGGAGATAGATTTGTAAGCATGCTTCCATCGTGGCATGCGTATGAACGAGCTTGTGAGTACTTCATTTTTACATGCGGTGTAGAGCAAGTTTATACCAC CGTGAGAAACTTAAAGGATGATCTGCGGCGTTACCAACCCCATTACATAATATCTGTTCCGTTGGTATTTGAGACACTCTACAGTGCGATACGGAAACAG ATTTCTTCGAGCTCTATGGTTCGTAAGGCTATCGCAGTTCTGTTCATACGAGTCAGCTTAACTTACATGGAGATGAAGAGAATCTACAAGGGGATGTATC TATCAAAAGAAGAGCGGCAGCCTTCATTTCTTGCTGCCATGTTGGATGGGTTATGGGCAAGGGTGATTGCTGCATTACTGCTCCCATTGCATATGCTGGC TAAGAAGATTGTGTACAGCAAGATCCACTCCTCTATTGGAATAAGCAAGGCTGGCATTAGTGGAGGTGGAAGTTTGCCTTCCTATGTTGACAGGTTTTTT GAGGCAATTGGGATAACAGTACAGAATGGTTACGGAATGACAGAGACAGCTCCAGTCACTGCTGCTCGCCGACGGAACCATAATGTTCTTGGCTCAATTG GACATCCGATTCGTCACACAGAGTTCAAGATTGTCGATGCTGAGACTGATGAAACTCTACCGCCCGGCGCAAAGGGGATTGTAAAGGTCAAGGGTCCACA GGTGATGAAAGGCTATTATAAGAATTCGTGGGCCACAGAACAAGTCCTGAACAAGGATGGTTGGCTAAACACGGGTGATATAGGTTGGATTGCTCCTCAT CATTCAATTGGGCGGAGCAGAAATTGCGGTGGCATTATCGTCCTTGAAGGCCGTGCAAAAGATACTATAGTTCTTTCAACAGGTGAAAACGTTGAGCCCT TGGAGCTTGAAGAAGCAGCCATGAAGAGCAATCTTATCCAACAAATCGTCATCATCGGTCAGGATCAACGGCGTTTAGGGGCATTGGTTGTCCCAAACAA AGAAGAAGTGTTGGTGGCTGCTAAAACGAAGTCGATTGTGGATACTGATGCCACTGAAGTCAGCAAGGATCAAATGACCAAGTTGCTTGACCAAGAACTC CGCACTAGGACTGCTGAGTGCTCATTTCAGGTCGGGCCGATTCTTGTGGTAGATGAGCCTTTCACGATTGAGAATGGGTTGATGACTCCAACCATGAAAG TTCGAAGGGACAGAGTGGCATCCAAATACCAACACCAAATTTCTCTCCTCTACAACAACTAA
AA sequence Show only first row Show all	>Lus10023224 pacid=23180922 polypeptide=Lus10023224 locus=Lus10023224.g ID=Lus10023224.BGIv1.0 annot-version=v1.0 MDVVGVLSSRCSPLSPMRTVKNFPLSAYALSSCDRSSRILHFLSPLALELSRVARFGCSSISLRRFRAHCELKKEESKIRRCSPFLEKTLLSGSGLGSDE WRAVPDIWRSAAEKYGDTVALVDPYHHPPTSMTYKEACPCALLIRHVSEVPDVAYITSLNFTRCYNKVLRVSFISIFVSTDQGTMAMGAINVVRGSRSTS EELLQIYNHSDSIALAVDNPELFNQIAGAFCSKATMRFIIVLWGDKSELNFPGIEEFPVFSYQEIIDLGQESYKAVSVAENTGSKYIYETISSDDTATLM YTSGTTGNPKGVMLTHKNLLHQINNLWDIVPALPGDRFVSMLPSWHAYERACEYFIFTCGVEQVYTTVRNLKDDLRRYQPHYIISVPLVFETLYSAIRKQ ISSSSMVRKAIAVLFIRVSLTYMEMKRIYKGMYLSKEERQPSFLAAMLDGLWARVIAALLLPLHMLAKKIVYSKIHSSIGISKAGISGGGSLPSYVDRFF EAIGITVQNGYGMTETAPVTAARRRNHNVLGSIGHPIRHTEFKIVDAETDETLPPGAKGIVKVKGPQVMKGYYKNSWATEQVLNKDGWLNTGDIGWIAPH HSIGRSRNCGGIIVLEGRAKDTIVLSTGENVEPLELEEAAMKSNLIQQIVIIGQDQRRLGALVVPNKEEVLVAAKTKSIVDTDATEVSKDQMTKLLDQEL RTRTAECSFQVGPILVVDEPFTIENGLMTPTMKVRRDRVASKYQHQISLLYNN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23790		AAE16	acyl activating enzyme 16, AMP...		Lus10023224 [exp]	0	1
AT1G74960		ATKAS2, KAS2, F...	ARABIDOPSIS BETA-KETOACYL-ACP ...		Lus10034886 [exp]	6.3	0.8457
AT3G44330			unknown protein		Lus10013307 [exp]	6.6	0.8572
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Lus10028196 [exp]	6.9	0.8529
AT3G11170		AtFAD7, FADD, F...	FATTY ACID DESATURASE D, fatty...		Lus10040660 [exp]	7.9	0.8257
AT1G06900			Insulinase (Peptidase family M...		Lus10042213 [exp]	9.5	0.8304
AT1G74960		ATKAS2, KAS2, F...	ARABIDOPSIS BETA-KETOACYL-ACP ...		Lus10033422 [exp]	10.2	0.8068
AT3G16950		PTLPD1, LPD1	lipoamide dehydrogenase 1 (.1....		Lus10016877 [exp]	10.7	0.8429
AT5G08415			Radical SAM superfamily protei...		Lus10041005 [exp]	12.2	0.7658
AT3G58140			phenylalanyl-tRNA synthetase c...		Lus10018853 [exp]	12.4	0.7868
AT3G03380		DEG7, DEGP7	degradation of periplasmic pro...		Lus10028521 [exp]	15.0	0.8058

Compare expression of checked genes

Lus10023224 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.