Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18790 252 / 1e-83 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008882 [exp] 332 / 6e-115 AT3G18790 435 / 5e-155 unknown protein Lus10008883 [exp] 164 / 2e-51 AT3G18790 152 / 2e-46 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G060200 [exp] 260 / 7e-87 AT3G18790 387 / 4e-136 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06246 [flax] [poplar] Isy1 Isy1-like splicing family
Representative CDS sequence Show only first row Show all	>Lus10023225 pacid=23181039 polypeptide=Lus10023225 locus=Lus10023225.g ID=Lus10023225.BGIv1.0 annot-version=v1.0 ATGGCGCGTAATGAAGAGAAAGCGCAGTCTATGTTGAATCGCTACGTAACAGCAAGGGAGCAGGAGAAGAAGAAGCCCAGGGAGCGCCGTCCTTTCCTCG CTTCCGAATGCCGGGACCTTGCCGACGCTGACAAGTGGCGCCAGCAGATCATGAGGGAGATCGGCCGGAAGGTCGCCGAGATCCAGAACGAAGGCCTCGG GGAGCATCTCCTCCGCGATCTCAACGACGAGATCAACAAGCTCATACGGGAGAAGTCTCACTGGGAGCGCCGCATCGTCGAGCTCGGCGGCCATAATTAC ACCAAAAACGCCGCTTATATTACCGACTTGGACGGCAAAATAGTAGACGGTATCGATTCGAGTTACTATGGGTATAGAGATGAGGAGGATGGGATTTTGG GGAAAGTTGAGGGCCCTGCTGAGAAAAAGATGAGGTTGGTTGCGGTTGAGGAGTGGAGGAGGATGGAGGAGATTAGGAAGGAAGCGAGGAAAGGAGCGAC GGAGGTTGTCACCGTCGGTGTTGTGCCGGCGGCTCAGGAGGTGCTGTTTGAGGAAGAAGAGGATGTGGTGGAAGAGGAGAGGAGGAAGGAGAAGGAGCAG GAAGAGAAGGAGAAACAAAGAGAGTTTGTGGTTCATGTACCTCTGCCAGATGAGAAAGAGATTGAGAAGATGGTGCTTGAGAAGAAGAAGAAGGAGCTAT TGATTAAATACGCCAGCGACTCATTGGTGGAGGAGCAGTCTGAAGCCAAGTCCATGCTTAACATTAAGCGCTAG
AA sequence Show only first row Show all	>Lus10023225 pacid=23181039 polypeptide=Lus10023225 locus=Lus10023225.g ID=Lus10023225.BGIv1.0 annot-version=v1.0 MARNEEKAQSMLNRYVTAREQEKKKPRERRPFLASECRDLADADKWRQQIMREIGRKVAEIQNEGLGEHLLRDLNDEINKLIREKSHWERRIVELGGHNY TKNAAYITDLDGKIVDGIDSSYYGYRDEEDGILGKVEGPAEKKMRLVAVEEWRRMEEIRKEARKGATEVVTVGVVPAAQEVLFEEEEDVVEEERRKEKEQ EEKEKQREFVVHVPLPDEKEIEKMVLEKKKKELLIKYASDSLVEEQSEAKSMLNIKR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18790			unknown protein		Lus10023225 [exp]	0	1
AT3G11400		ATEIF3G1, EIF3G...	eukaryotic translation initiat...		Lus10030482 [exp]	8.1	0.9041
AT5G63610		HEN3, CDKE;1, C...	HUA ENHANCER 3, cyclin-depende...		Lus10032422 [exp]	9.5	0.8295
AT2G37230			Tetratricopeptide repeat (TPR)...		Lus10034721 [exp]	10.1	0.9033
AT2G47990		SWA1, EDA13, ED...	SLOW WALKER1, EMBRYO SAC DEVEL...		Lus10015340 [exp]	13.3	0.8974
AT2G39020			Acyl-CoA N-acyltransferases (N...		Lus10023533 [exp]	14.7	0.8791
AT5G40660			ATP12 protein-related (.1)		Lus10009910 [exp]	15.0	0.8800
AT3G55340		PHIP1	phragmoplastin interacting pro...		Lus10030327 [exp]	17.7	0.8854
AT1G07780		TRP6, PAI1	TRANSIENT RECEPTOR POTENTIAL 6...		Lus10007494 [exp]	18.0	0.8471
AT3G22670			Pentatricopeptide repeat (PPR)...		Lus10041193 [exp]	22.5	0.8738
AT5G38830			Cysteinyl-tRNA synthetase, cla...		Lus10021862 [exp]	22.6	0.8736

Compare expression of checked genes

Lus10023225 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.