Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23770 554 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT4G14080 535 / 0 MEE48 maternal effect embryo arrest 48, O-Glycosyl hydrolases family 17 protein (.1) AT3G07320 499 / 2e-175 O-Glycosyl hydrolases family 17 protein (.1) AT2G05790 315 / 6e-103 O-Glycosyl hydrolases family 17 protein (.1) AT5G55180 314 / 8e-103 O-Glycosyl hydrolases family 17 protein (.1.2) AT4G26830 304 / 4e-99 O-Glycosyl hydrolases family 17 protein (.1) AT5G56590 303 / 4e-98 O-Glycosyl hydrolases family 17 protein (.1) AT3G13560 283 / 3e-90 O-Glycosyl hydrolases family 17 protein (.1.2.3) AT5G24318 281 / 3e-90 O-Glycosyl hydrolases family 17 protein (.1.2) AT1G66250 282 / 6e-90 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008881 [exp] 865 / 0 AT3G23770 579 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10038211 [exp] 486 / 1e-169 AT3G07320 614 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10025892 [exp] 414 / 2e-142 AT3G07320 545 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10032562 [exp] 328 / 2e-108 AT5G55180 642 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10018306 [exp] 318 / 4e-104 AT5G55180 632 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10004391 [exp] 317 / 4e-104 AT5G55180 602 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10040600 [exp] 306 / 1e-99 AT5G55180 630 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10015151 [exp] 300 / 3e-97 AT2G05790 731 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10004044 [exp] 295 / 9e-95 AT1G66250 752 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G321900 [exp] 615 / 0 AT3G23770 620 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.017G060300 [exp] 606 / 0 AT3G23770 599 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.002G247900 [exp] 522 / 0 AT3G07320 653 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.002G247800 [exp] 479 / 1e-167 AT3G07320 632 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.002G224600 [exp] 307 / 5e-100 AT2G05790 750 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G158400 [exp] 305 / 4e-99 AT2G05790 751 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.011G094400 [exp] 302 / 4e-98 AT5G55180 635 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.004G086400 [exp] 298 / 3e-96 AT1G66250 741 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.018G068600 [exp] 296 / 1e-95 AT5G56590 685 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.017G130200 [exp] 295 / 6e-95 AT1G66250 731 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [flax] [poplar] PF07983 [flax] [poplar] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Lus10023226 pacid=23181100 polypeptide=Lus10023226 locus=Lus10023226.g ID=Lus10023226.BGIv1.0 annot-version=v1.0 ATGGGCACGGACGTTCCCAACATCGGCATCAACTACGGTCGCCTGGGGAACGACTTGCCAACACCTTTTAGATCGATCGAGCTAATCAAGTCGATGCAGG TCAGCAGTGTAAAGCTCTACGACCCCAACCAGGAGATCCTCAAACTGTTGGCAGGAACCAAGATTCAGGTCTCGGTTACGGTACCGAACCAAGAGATCAT CGGCATCTCGCAGAACCGAAGCCTGGCTGTTAAATGGGTTCGGGATAACGTCCTTGCCTACTATCCGGGGACCATGATCCGGTTCGTTCTGGTAGGGAAT GAGGTTCTGAGCCGTTCTTCGGCGGAGGATATGCAAATCTGGAATCACCTTGTTCCGGCAATGTCGAAAATCAAGAACATTATCAAATCGCACAACATCC TCAACATCAAAGTCGGGACCCCTTTGGCCATGGATGTCTTGCAGAACACGTCGCCTCCTACAAATGCAACATTCCGGTCCGACATTTCCTTCACTGTGAT GCCGCAGTTACTTAAATTCCTAAACAGCACCAAATCCTTCTTCTTCATCAATGCCTATCCCTACTTCCCCTGGTCGGAAAACCCCACAAGCTCTGCGCTG GATTTCGCGCTGTTTCAATCCAAGTCCAACTACACTGATCCCGGAAGCGGTCTGGTTTACAACAACCTTTTGGATCAAATGCTCGACTCACTCTTCTTCG CGATGAACAAGCTCGGATATCCGGACATCCGAGTTTCGATATCGGAGACCGGCTGGCCCCACGCCGGCGATATAGACCAACCCGGTGCGAACACGCATAA TGCAGCGATATATAACCGGAATGTGATTCGAAAAATGACCGCCAAGCCACCGATCGGTACACCTGCGAAGCCGGGAGTGGCCATACCGACGTTCATTTTC TCTTTGTACGACGAGAACGGGAAGAAAGGCCCCGGGACAGAGAGGCACTGGGGATTGCTACGACCTGACGGGACAGCGATATACGATATAGACCTGACTG GGAGTCGAACTGATTCAGAGTACAGGGCGTTACCCGAAGGAAGGAATAATATGGCTTACAAGGGGAAAGTATGGTGCGTTGTGGCGAGAGGAGCTGACAT GAGGAGCCTGGGACGAGAACTTTCATACGCATGTAGCCATGGGAATCGGACTTGTGAAGCACTTGAGCCAGGGAAGGAATGCTACGAGCCAGTTTCGCTG ATTTGGCATGCCAGCTATGCGTTCAGCTCGTACTGGACGCAGTTTAGGAGCCAAGGTGCTACCTGCCACTTCAATGGACTTGCAGTTCAGACCACGAGGA ATCCTGGTCATGGATCTTGCCATTTCCCTAACGTGACAGTTTGA
AA sequence Show only first row Show all	>Lus10023226 pacid=23181100 polypeptide=Lus10023226 locus=Lus10023226.g ID=Lus10023226.BGIv1.0 annot-version=v1.0 MGTDVPNIGINYGRLGNDLPTPFRSIELIKSMQVSSVKLYDPNQEILKLLAGTKIQVSVTVPNQEIIGISQNRSLAVKWVRDNVLAYYPGTMIRFVLVGN EVLSRSSAEDMQIWNHLVPAMSKIKNIIKSHNILNIKVGTPLAMDVLQNTSPPTNATFRSDISFTVMPQLLKFLNSTKSFFFINAYPYFPWSENPTSSAL DFALFQSKSNYTDPGSGLVYNNLLDQMLDSLFFAMNKLGYPDIRVSISETGWPHAGDIDQPGANTHNAAIYNRNVIRKMTAKPPIGTPAKPGVAIPTFIF SLYDENGKKGPGTERHWGLLRPDGTAIYDIDLTGSRTDSEYRALPEGRNNMAYKGKVWCVVARGADMRSLGRELSYACSHGNRTCEALEPGKECYEPVSL IWHASYAFSSYWTQFRSQGATCHFNGLAVQTTRNPGHGSCHFPNVTV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23770			O-Glycosyl hydrolases family 1...		Lus10023226 [exp]	0	1
AT2G31730	bHLH		basic helix-loop-helix (bHLH) ...		Lus10041649 [exp]	1.0	0.9615
AT1G10800			unknown protein		Lus10037441 [exp]	1.7	0.9448
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Lus10042904 [exp]	2.0	0.9495
AT5G04910			unknown protein		Lus10028878 [exp]	2.4	0.9365
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Lus10009480 [exp]	3.2	0.9366
					Lus10039025 [exp]	3.5	0.9409
AT1G09850		XBCP3	xylem bark cysteine peptidase ...		Lus10024295 [exp]	4.2	0.9129
AT4G12310		CYP706A5	"cytochrome P450, family 706, ...		Lus10024580 [exp]	4.5	0.9297
AT3G54070			Ankyrin repeat family protein ...		Lus10038357 [exp]	5.9	0.9354
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10009916 [exp]	6.3	0.9352

Compare expression of checked genes

Lus10023226 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.