Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55980 52 / 1e-09 serine-rich protein-related (.1) AT1G67910 45 / 4e-07 unknown protein AT3G13227 43 / 5e-06 serine-rich protein-related (.1) AT3G56500 41 / 3e-05 serine-rich protein-related (.1) AT5G20370 40 / 0.0001 serine-rich protein-related (.1) AT1G24577 38 / 0.0001 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008880 [exp] 197 / 2e-66 AT5G55980 63 / 1e-13 serine-rich protein-related (.1) Lus10000442 [exp] 45 / 6e-07 AT1G67910 56 / 1e-11 unknown protein Lus10034901 [exp] 45 / 9e-07 AT1G67910 49 / 6e-09 unknown protein Lus10023632 [exp] 44 / 2e-06 AT1G67910 48 / 1e-08 unknown protein Lus10026701 [exp] 43 / 2e-06 AT1G67910 56 / 5e-12 unknown protein Lus10043215 [exp] 41 / 2e-05 AT5G55980 44 / 8e-07 serine-rich protein-related (.1) Lus10011094 [exp] 40 / 5e-05 AT5G55980 44 / 1e-06 serine-rich protein-related (.1) Lus10008811 [exp] 39 / 9e-05 AT5G11090 61 / 2e-12 serine-rich protein-related (.1) Lus10039998 [exp] 40 / 0.0002 AT5G25280 157 / 3e-48 serine-rich protein-related (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G371400 [exp] 57 / 4e-11 AT5G55980 50 / 2e-08 serine-rich protein-related (.1) Potri.008G186200 [exp] 47 / 7e-08 AT1G67910 85 / 4e-23 unknown protein Potri.010G046700 [exp] 47 / 1e-07 AT1G67910 82 / 4e-22 unknown protein Potri.018G079200 [exp] 46 / 1e-07 AT1G67910 45 / 9e-08 unknown protein Potri.002G250700 [exp] 40 / 6e-05 AT3G56500 43 / 5e-06 serine-rich protein-related (.1) Potri.006G060800 [exp] 40 / 0.0001 AT5G25280 130 / 2e-37 serine-rich protein-related (.1.2) Potri.018G120400 [exp] 40 / 0.0001 AT5G11090 126 / 3e-36 serine-rich protein-related (.1) Potri.018G120300 [exp] 39 / 0.0002 AT5G11090 67 / 1e-14 serine-rich protein-related (.1) Potri.006G060700 [exp] 39 / 0.0002 AT5G11090 66 / 4e-14 serine-rich protein-related (.1) Potri.006G159300 [exp] 37 / 0.0007 AT1G24577 43 / 5e-07 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023227 pacid=23180998 polypeptide=Lus10023227 locus=Lus10023227.g ID=Lus10023227.BGIv1.0 annot-version=v1.0 ATGGAGAGAAGCTCGTCGGAGGAGTCGAAGATGACGAGGATGGAGAGGCAAATGCCACCCAAAATAGCACTATCGGAACCACTCAATATGGAGGCATTCA AGAGCAAATGCAGCATGATTTCACCAGAGCCAGAGAGTTGCTACTCCCAAACAGACTCCCCAAAGTCTTCTACGTCGTCGTTTCGAAGGACTCATAATTG GGCCAAACCAGCAACATCAAGCACACCAACTGGGAAATGGAACTGTTTGTGCTCGCCCACTACTCACGTTGGCTCGTTCCGGTGCAGAATGCATCGAGCC GGGGGAGGAATCGGAGGAATGGTTCGTGGAGGTTCGGTCGGGTCCAATCTGTCCGAGTTGGCATCAAAGTCACGCCCTCTTGCTGAACTAATCTAG
AA sequence Show only first row Show all	>Lus10023227 pacid=23180998 polypeptide=Lus10023227 locus=Lus10023227.g ID=Lus10023227.BGIv1.0 annot-version=v1.0 MERSSSEESKMTRMERQMPPKIALSEPLNMEAFKSKCSMISPEPESCYSQTDSPKSSTSSFRRTHNWAKPATSSTPTGKWNCLCSPTTHVGSFRCRMHRA GGGIGGMVRGGSVGSNLSELASKSRPLAELI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55980			serine-rich protein-related (....		Lus10023227 [exp]	0	1
AT5G17680			disease resistance protein (TI...		Lus10038249 [exp]	16.9	0.8213
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10010698 [exp]	19.4	0.7897
AT5G19980		GONST4	golgi nucleotide sugar transpo...		Lus10033058 [exp]	33.2	0.8202
AT4G09510		A/N-InvI, CINV2	alkaline/neutral invertase I, ...		Lus10016938 [exp]	45.5	0.8056
AT1G03430		AHP5	histidine-containing phosphotr...		Lus10027965 [exp]	52.8	0.7653
AT5G44440			FAD-binding Berberine family p...		Lus10039682 [exp]	86.7	0.7908
AT1G61260			Protein of unknown function (D...		Lus10020090 [exp]	97.3	0.7817
AT3G56930			DHHC-type zinc finger family p...		Lus10010447 [exp]	122.6	0.7574
AT4G09510		A/N-InvI, CINV2	alkaline/neutral invertase I, ...		Lus10014824 [exp]	125.8	0.7693
AT2G30340	AS2	LBD13	LOB domain-containing protein ...		Lus10034208 [exp]	139.4	0.7700

Compare expression of checked genes

Lus10023227 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.