Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24520 481 / 4e-172 ATTTG1, URM23, TTG1 UNARMED 23, TRANSPARENT TESTA GLABRA 1, Transducin/WD40 repeat-like superfamily protein (.1.2.3) AT1G12910 370 / 3e-128 LWD1, ATAN11 LIGHT-REGULATED WD 1, ANTHOCYANIN11, Transducin/WD40 repeat-like superfamily protein (.1) AT3G26640 363 / 1e-125 LWD2 LIGHT-REGULATED WD 2, Transducin/WD40 repeat-like superfamily protein (.1) AT1G29260 68 / 1e-12 PEX7, ATPEX7 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) AT2G16780 56 / 1e-08 MSI02, NFC2, NFC02, MSI2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) AT4G35370 56 / 2e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT4G35050 56 / 2e-08 NFC3, MSI3 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) AT4G18900 53 / 1e-07 Transducin/WD40 repeat-like superfamily protein (.1) AT1G18830 51 / 7e-07 Transducin/WD40 repeat-like superfamily protein (.1) AT3G15354 51 / 1e-06 SPA3 SPA1-related 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041500 [exp] 366 / 1e-126 AT1G12910 641 / 0.0 LIGHT-REGULATED WD 1, ANTHOCYANIN11, Transducin/WD40 repeat-like superfamily protein (.1) Lus10012593 [exp] 299 / 1e-101 AT1G12910 458 / 2e-164 LIGHT-REGULATED WD 1, ANTHOCYANIN11, Transducin/WD40 repeat-like superfamily protein (.1) Lus10005074 [exp] 54 / 9e-08 AT4G35050 590 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10027848 [exp] 51 / 8e-07 AT4G35050 585 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10040282 [exp] 49 / 4e-06 AT5G13840 685 / 0.0 FIZZY-related 3 (.1.2) Lus10039578 [exp] 49 / 7e-06 AT3G63460 1380 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2.3) Lus10026837 [exp] 48 / 7e-06 AT5G13480 759 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10005323 [exp] 48 / 8e-06 AT3G63460 885 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2.3) Lus10030869 [exp] 48 / 9e-06 AT1G10580 939 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G006100 [exp] 476 / 3e-170 AT5G24520 577 / 0.0 UNARMED 23, TRANSPARENT TESTA GLABRA 1, Transducin/WD40 repeat-like superfamily protein (.1.2.3) Potri.015G002600 [exp] 472 / 1e-168 AT5G24520 565 / 0.0 UNARMED 23, TRANSPARENT TESTA GLABRA 1, Transducin/WD40 repeat-like superfamily protein (.1.2.3) Potri.002G220500 [exp] 372 / 7e-129 AT1G12910 679 / 0.0 LIGHT-REGULATED WD 1, ANTHOCYANIN11, Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G140700 [exp] 372 / 8e-129 AT1G12910 677 / 0.0 LIGHT-REGULATED WD 1, ANTHOCYANIN11, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G209000 [exp] 313 / 1e-105 AT1G12910 391 / 3e-136 LIGHT-REGULATED WD 1, ANTHOCYANIN11, Transducin/WD40 repeat-like superfamily protein (.1) Potri.016G075800 [exp] 285 / 9e-95 AT1G12910 345 / 2e-118 LIGHT-REGULATED WD 1, ANTHOCYANIN11, Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G066600 [exp] 66 / 2e-12 AT1G29260 379 / 3e-134 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Potri.004G057600 [exp] 65 / 1e-11 AT1G29260 556 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Potri.007G019833 [exp] 52 / 2e-07 AT4G18905 563 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.007G019601 [exp] 52 / 2e-07 AT4G18905 566 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10023228 pacid=23180943 polypeptide=Lus10023228 locus=Lus10023228.g ID=Lus10023228.BGIv1.0 annot-version=v1.0 ATGGAAAACTCCGGCAAGGAATCCAACCCTTCCTCCGTCACCTACAACTCCCCTTACCCACTCTATGCCATGGCCATGTCCCCTTCCCCACTCCGCCGCC GCATCGCCGTCGGCAGCTTCATCGAAGACTACACCAACCGAGTCGACATCCTCTCCTTCGACCCCGATTCCCTCACCATCTCACCAAACCCAAATCCCCA ATCCTTCACCCACCCTTACCCTCCCACCAAGCTCATGTTCCACCCCTCCGATCACTCCTCCTCCCTCCTCGCCTCCTCCGGTGACTACCTCCGCCTCTGG AACCTCCCCTCCGACGATTCCTCATCAATCGACCCAATCTCACCAATCTCCGTCCTCAACAACAGCAAAACAAGCGAGTTCTGCGCTCCGTTAACCTCCT TCGACTGGAACGAGATCGAGCCGAAGCGAATCGGAACCTCCAGCATCGACACCACCTGCACAATCTGGGACGTCGAGAACGGCGTCGTCGAAACTCAGCT CATCGCCCACGACAAGGAAGTCTACGACGTCGCTTGGGGGGAATCCAGAGTCTTCTCCTCCGTCTCCGCCGACGGATCCGTACGGATCTTCGATCTACGC GATAAAGAGCACTCCACAATCATCTATGAGACGGACACCCCTCTGCTCCGATTAGCGTGGAACAAGCAGGATCTAAGGTACATGGCGACGATTCTGATGG ACAGTAATAAGGTTGTGATTTTGGATATTCGTTCTCCGTGTGTTCCCGTTGCTGAGCTGGATAGACATAAAGGGTGTGTGAACGCCATTGCTTGGGCTCC TCAGAGTTCTAAGCATGTTTGCTCCGGCGGGGATGATTCGTTGGCGTTGTTGTGGGAGCTGCCTACTGTGGCGGGGGCTAATGGGATTGATCCTGTCTCT GTGTATGAAGCTGGTTCTGAGATTAATCAGGTTCAGTGGCCGACTGGGTATCCCGATTGGATTGCTGTTGCGTTTTCTGATAAATTGCAGATGTTGAGAG TGTGA
AA sequence Show only first row Show all	>Lus10023228 pacid=23180943 polypeptide=Lus10023228 locus=Lus10023228.g ID=Lus10023228.BGIv1.0 annot-version=v1.0 MENSGKESNPSSVTYNSPYPLYAMAMSPSPLRRRIAVGSFIEDYTNRVDILSFDPDSLTISPNPNPQSFTHPYPPTKLMFHPSDHSSSLLASSGDYLRLW NLPSDDSSSIDPISPISVLNNSKTSEFCAPLTSFDWNEIEPKRIGTSSIDTTCTIWDVENGVVETQLIAHDKEVYDVAWGESRVFSSVSADGSVRIFDLR DKEHSTIIYETDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPCVPVAELDRHKGCVNAIAWAPQSSKHVCSGGDDSLALLWELPTVAGANGIDPVS VYEAGSEINQVQWPTGYPDWIAVAFSDKLQMLRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24520		ATTTG1, URM23, ...	UNARMED 23, TRANSPARENT TESTA ...		Lus10023228 [exp]	0	1
AT1G64450			Glycine-rich protein family (....		Lus10003189 [exp]	4.2	0.8693
AT5G17850			Sodium/calcium exchanger famil...		Lus10020318 [exp]	4.6	0.8859
AT3G24040			Core-2/I-branching beta-1,6-N-...		Lus10023687 [exp]	8.5	0.8628
AT2G22500		UCP5, ATPUMP5, ...	DICARBOXYLATE CARRIER 1, PLANT...		Lus10009270 [exp]	10.6	0.8619
AT3G21570			unknown protein		Lus10034002 [exp]	12.6	0.8517
AT1G08315			ARM repeat superfamily protein...		Lus10039500 [exp]	13.6	0.8450
AT1G66400		CML23	calmodulin like 23 (.1)		Lus10028516 [exp]	14.2	0.8468
AT3G52500			Eukaryotic aspartyl protease f...		Lus10013324 [exp]	17.0	0.8130
AT4G24930			thylakoid lumenal 17.9 kDa pro...		Lus10007492 [exp]	17.5	0.8511
AT4G24570		DIC2	dicarboxylate carrier 2 (.1)		Lus10009271 [exp]	24.0	0.8437

Compare expression of checked genes

Lus10023228 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.