Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46790 270 / 5e-85 TL1, APRR9 TOC1-LIKE PROTEIN 1, Arabidopsis pseudo-response regulator 9, pseudo-response regulator 9 (.1.2) AT5G24470 253 / 1e-76 APRR5 pseudo-response regulator 5 (.1) AT5G60100 161 / 6e-44 APRR3 pseudo-response regulator 3 (.1.2.3) AT5G02810 161 / 1e-42 APRR7, PRR7 pseudo-response regulator 7 (.1) AT5G61380 120 / 5e-29 AtTOC1, TOC1, APRR1, ARR1 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) AT2G25180 104 / 2e-23 GARP ARR12 response regulator 12 (.1) AT4G31920 100 / 4e-22 GARP ARR10 response regulator 10 (.1) AT2G01760 98 / 6e-22 GARP ARR14 response regulator 14 (.1) AT1G67710 96 / 6e-21 GARP ARR11 response regulator 11 (.1) AT3G16857 95 / 1e-20 GARP ARR1 response regulator 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008879 [exp] 836 / 0 AT5G24470 316 / 4e-98 pseudo-response regulator 5 (.1) Lus10032934 [exp] 486 / 3e-167 AT5G24470 356 / 2e-114 pseudo-response regulator 5 (.1) Lus10015571 [exp] 485 / 9e-167 AT2G46790 365 / 1e-117 TOC1-LIKE PROTEIN 1, Arabidopsis pseudo-response regulator 9, pseudo-response regulator 9 (.1.2) Lus10023230 [exp] 364 / 4e-119 AT5G24470 300 / 2e-92 pseudo-response regulator 5 (.1) Lus10008878 [exp] 364 / 5e-119 AT5G24470 296 / 8e-91 pseudo-response regulator 5 (.1) Lus10014018 [exp] 163 / 5e-43 AT5G02810 452 / 6e-148 pseudo-response regulator 7 (.1) Lus10000566 [exp] 131 / 8e-33 AT5G61380 433 / 5e-146 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Lus10021629 [exp] 132 / 1e-32 AT5G61380 326 / 4e-103 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Lus10015720 [exp] 130 / 3e-32 AT5G61380 470 / 3e-160 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G002300 [exp] 308 / 3e-97 AT5G24470 301 / 1e-92 pseudo-response regulator 5 (.1) Potri.012G005900 [exp] 306 / 2e-96 AT5G24470 305 / 9e-94 pseudo-response regulator 5 (.1) Potri.002G179800 [exp] 223 / 4e-65 AT5G24470 269 / 2e-80 pseudo-response regulator 5 (.1) Potri.014G106000 [exp] 219 / 7e-64 AT5G24470 271 / 3e-81 pseudo-response regulator 5 (.1) Potri.008G046200 [exp] 170 / 9e-46 AT5G02810 452 / 1e-148 pseudo-response regulator 7 (.1) Potri.010G215200 [exp] 165 / 7e-44 AT5G02810 441 / 2e-144 pseudo-response regulator 7 (.1) Potri.015G061900 [exp] 132 / 4e-33 AT5G61380 474 / 2e-161 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Potri.008G135500 [exp] 105 / 7e-24 AT4G16110 370 / 3e-119 response regulator 2 (.1) Potri.006G188000 [exp] 102 / 5e-23 AT2G25180 386 / 8e-126 response regulator 12 (.1) Potri.010G105600 [exp] 101 / 2e-22 AT4G16110 376 / 2e-121 response regulator 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0281 [flax] [poplar] CCT PF06203 [flax] [poplar] CCT CCT motif CL0304 [flax] [poplar] CheY PF00072 [flax] [poplar] Response_reg Response regulator receiver domain
Representative CDS sequence Show only first row Show all	>Lus10023229 pacid=23180952 polypeptide=Lus10023229 locus=Lus10023229.g ID=Lus10023229.BGIv1.0 annot-version=v1.0 ATGATGCTGAGAGTTTTGCTCGTTGAGTCTGATGTTTCCACTAGACAGATCGTTGCTGCTCTTCTCAGGAAATGCAGTTACAGAGTTGTTGCAGCTTCGA ATGGTTTGAAAGCGTGGGAGATACTGAAAGAAAGGGGCCATGAGATAGACCTTATTTTGACGGAAGTGGATCTGCCTTCTATATCCGGATACGCTCTTCT CTCGCTGATCATGGAGCATGAAGTATGCAAAAACATTCCTGTAATAATGATGTCCAATCAGGAAGCGGTCAGCACGGTTTACAAATGCATGTTAAAAGGC GCCGGGGACTACCTTATAAAGCCTATAAGAAGAAATGAACTCAGAAATTTGTGGCAGCATGTTTGGAGAAAGCATTCGTTTCTTGCAAAAGGAGCAGGCC TTCTGGATAAACATATTGTCCAAGATAAGGTAGAGCCTGCTTGTGTTGGTGATGGATATTTTTCTCAGATTAACAAGGAGTGTTCTGAGAATGGAAGTGA TAAAGAGAACTCTTGCATGGTTGTTGATGTCGATGCCGTAGGTTCAAAAAATGTGAAGAAGCATCAGATCTCCACTCAGAATTTGCTGGTCCAGGACAAT CAAGCGAGAGGACCTACTTCTAATGATGGTAATGCAATCATTCTAGAAAATGTCGATACAAATGCAGATACGGATACTACGAAGGTTTGCTCTAGTAACA GTGCAAATTTTACCGGCGAAGAGATTGATTTCATGGGAGCAGCTCCACCTCACCAATCTTCCATAATGCATATGGAAAGTGAGTTCGACTCTGGTTCAAA CTTGGATCTCTCCTTGAGAAGTTATCGTCCTGATGGGTTTGAGGTTCAAGAACCAGAAGAGGGAAACACCATCAGGCATTCTAGTGCTTCATCCTTCACA CGGTATACTGGCAGGAAACTGTTCTTCGAAAATTTACCATCTGCTAACCCAAAGGAGCAAGCTTCTGTTTTGGAGCAAGTAATTTCCAGTATCACCGATA CTGCTGTTCCTGTTGTTCAAGTCAAAGAATGTGAAAATAAAAATGAATTCGATGGAAAGAACGTTTGCCCCAAAACCTCTGTTAAAGTGAGTGATTCAAA CGATGCAACATTGCCAGACGGGGACAAGAGGTTCGAGTCTTGGACGGATCAGGGGCATAATAGTACTACTAACAGCTCAGGGCATGGAAGCGCTTGTGGA AGTAATAGCGATACAGAACAAGTGACCATGATCAAGGCTGAAGCTGCAGAGAGCAACAATGTTAGAGGAGTTTTCACACACATCAAAACATCTGCGAGAT GCGAGCAAAGAGAGGCTGCTGTAGCCAGATTTCGGCTGAAACGTAAAGAGAGATGCTACGATAAAAAGGTTCGATACGAGAGTAGAAGAATGCTGGCGGA GAAGCGTCCCAGAGTGAAAGGACAGTTTGTAAGACAAGTTCCAGCTGCGGTGGCCCCTCTACCCGAGCGATGA
AA sequence Show only first row Show all	>Lus10023229 pacid=23180952 polypeptide=Lus10023229 locus=Lus10023229.g ID=Lus10023229.BGIv1.0 annot-version=v1.0 MMLRVLLVESDVSTRQIVAALLRKCSYRVVAASNGLKAWEILKERGHEIDLILTEVDLPSISGYALLSLIMEHEVCKNIPVIMMSNQEAVSTVYKCMLKG AGDYLIKPIRRNELRNLWQHVWRKHSFLAKGAGLLDKHIVQDKVEPACVGDGYFSQINKECSENGSDKENSCMVVDVDAVGSKNVKKHQISTQNLLVQDN QARGPTSNDGNAIILENVDTNADTDTTKVCSSNSANFTGEEIDFMGAAPPHQSSIMHMESEFDSGSNLDLSLRSYRPDGFEVQEPEEGNTIRHSSASSFT RYTGRKLFFENLPSANPKEQASVLEQVISSITDTAVPVVQVKECENKNEFDGKNVCPKTSVKVSDSNDATLPDGDKRFESWTDQGHNSTTNSSGHGSACG SNSDTEQVTMIKAEAAESNNVRGVFTHIKTSARCEQREAAVARFRLKRKERCYDKKVRYESRRMLAEKRPRVKGQFVRQVPAAVAPLPER

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24470		APRR5	pseudo-response regulator 5 (....		Lus10023229 [exp]	0	1
AT5G24470		APRR5	pseudo-response regulator 5 (....		Lus10008879 [exp]	1.0	0.9088
AT2G16365			F-box family protein (.1.2.3.4...		Lus10040438 [exp]	1.4	0.8659
AT5G19500			Tryptophan/tyrosine permease (...		Lus10036527 [exp]	7.1	0.8377
AT1G61900			unknown protein		Lus10006773 [exp]	12.7	0.7954
AT1G69450			Early-responsive to dehydratio...		Lus10030431 [exp]	13.7	0.8321
AT5G19500			Tryptophan/tyrosine permease (...		Lus10041401 [exp]	17.2	0.8310
AT5G24470		APRR5	pseudo-response regulator 5 (....		Lus10023230 [exp]	18.4	0.7688
AT4G18240		ATSS4, SSIV	ARABIDOPSIS THALIANA STARCH SY...		Lus10042837 [exp]	23.2	0.8052
AT5G24470		APRR5	pseudo-response regulator 5 (....		Lus10008878 [exp]	24.2	0.7296
AT4G18130		PHYE	phytochrome E (.1)		Lus10011967 [exp]	27.0	0.7917

Compare expression of checked genes

Lus10023229 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.