Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38720 176 / 1e-52 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008877 [exp] 316 / 2e-107 AT5G38720 200 / 2e-62 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G108700 [exp] 209 / 2e-65 AT5G38720 178 / 3e-54 unknown protein Potri.004G106900 [exp] 207 / 6e-65 AT5G38720 187 / 2e-57 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023232 pacid=23180979 polypeptide=Lus10023232 locus=Lus10023232.g ID=Lus10023232.BGIv1.0 annot-version=v1.0 ATGAGAAATCAAGAGCTGGAGAGTCGGAAGATTAAGAGGAAGCTGAAAAAGAGCAGCGGCGATGGTGATGAAAATGCTGTTTGGTTAGGTGATTCTTCTG TGCTGCTGCTACGAAACTTCCAATCTGTGCTATCTGAATATGTTAAGATTTGTGTGGATTGGAGGAAGCTTAGACAATTATTAAGGATGCAAATGTTTAG TGTCCTGGCATGGTGGCTGACTTTTCTGCTCTTCTTAGATGCTCAAGTTAAGGACAAAGCAGTTAGAGATGAAAAGAAGTTGGGCGCTGGGAAGAAAAAG AGGAGGGAAATGAAGAATGATGTTGATTCTGCTGAACTCATGAAAGTCGATGAAGCTAACACAACGATTGAAGTGGAGAAGGTAAAGAAGAAGAAACGAA AATGTGTGTCGGATAACAGTGTCCTGGTTGAAGAGTGTGAACAATTAGATGATGTCCCTCCCAAACAAAGTGGTAAATCTAAAACGTTAAAGAAGAAGAA GAAGAAGAACGAGCAGTCTGATGCATCAGAAGGGGGAGGTGACATGAAGGGGAAAACAGAAAAATATGAAGAGGAGGAGGTGTACTGCATGTCATCAGGG GATGAAGACTGCTCAAAAGGAGTGAAAAAATGGCTTACAGAGTACCACCAAAGTAGACCAGGTTTGAAGGTGTTGCAACAAAGAATAGACGACTTTATAA TTTCTCATGAAGAAAAGCTCGAGCAGGAAAAGAAAGAGAAAGAAGCTCTGGCTGCAGAAGGAGGATGGACAGTGGTCGGACATCAAAGAGGAAGGAAAAA GACGACAGACCCCGAAAGCGGGATCGCCGTGGGCTCTGCTGTTCCAGTGGCTAAAGCCGATGACATCTTAGCGAAGAAGAAACGCAAAGAAGTAGGAGTA GATTTCTATAGGTTCCAGAAGAGAGAAGCTCATATGAATGAAATCGTGGCACTCCAGAGCAAATTTGAGCAGGACAAGAAGCGGATCCAGCAAATGAGGG CGGCAAGAAAGTTCCGACCTTACTGA
AA sequence Show only first row Show all	>Lus10023232 pacid=23180979 polypeptide=Lus10023232 locus=Lus10023232.g ID=Lus10023232.BGIv1.0 annot-version=v1.0 MRNQELESRKIKRKLKKSSGDGDENAVWLGDSSVLLLRNFQSVLSEYVKICVDWRKLRQLLRMQMFSVLAWWLTFLLFLDAQVKDKAVRDEKKLGAGKKK RREMKNDVDSAELMKVDEANTTIEVEKVKKKKRKCVSDNSVLVEECEQLDDVPPKQSGKSKTLKKKKKKNEQSDASEGGGDMKGKTEKYEEEEVYCMSSG DEDCSKGVKKWLTEYHQSRPGLKVLQQRIDDFIISHEEKLEQEKKEKEALAAEGGWTVVGHQRGRKKTTDPESGIAVGSAVPVAKADDILAKKKRKEVGV DFYRFQKREAHMNEIVALQSKFEQDKKRIQQMRAARKFRPY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38720			unknown protein		Lus10023232 [exp]	0	1
AT5G48870		SAD1	SUPERSENSITIVE TO ABA AND DROU...		Lus10011877 [exp]	1.0	0.9082
AT3G07750			3'-5'-exoribonuclease family p...		Lus10001173 [exp]	4.9	0.8842
AT1G31220			Formyl transferase (.1)		Lus10013428 [exp]	5.7	0.8898
AT3G17300		EMB2786	unknown protein		Lus10037835 [exp]	5.7	0.9047
AT5G18540			unknown protein		Lus10002878 [exp]	5.9	0.8907
AT2G03670		CDC48B	cell division cycle 48B (.1)		Lus10042029 [exp]	6.9	0.8929
AT4G21800		QQT2	quatre-quart2, P-loop containi...		Lus10040022 [exp]	8.1	0.8835
AT4G28360			Ribosomal protein L22p/L17e fa...		Lus10037603 [exp]	10.8	0.8980
AT1G36050			Endoplasmic reticulum vesicle ...		Lus10036158 [exp]	12.9	0.8469
AT1G02330			unknown protein		Lus10026267 [exp]	14.4	0.8504

Compare expression of checked genes

Lus10023232 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.