Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49380 108 / 5e-27 IQD15 IQ-domain 15 (.1) AT1G01110 79 / 3e-16 IQD18 IQ-domain 18 (.1.2) AT4G00820 78 / 1e-15 IQD17 IQ-domain 17 (.1) AT4G10640 77 / 1e-15 IQD16 IQ-domain 16 (.1) AT3G16490 61 / 2e-10 IQD26 IQ-domain 26 (.1) AT3G49260 60 / 5e-10 IQD21 IQ-domain 21 (.1.2.3) AT1G72670 58 / 3e-09 IQD8 IQ-domain 8 (.1) AT1G74690 56 / 1e-08 IQD31 IQ-domain 31 (.1) AT1G51960 56 / 1e-08 IQD27 IQ-domain 27 (.1) AT4G29150 56 / 1e-08 IQD25 IQ-domain 25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010104 [exp] 78 / 9e-16 AT1G01110 434 / 3e-147 IQ-domain 18 (.1.2) Lus10012608 [exp] 78 / 1e-15 AT1G01110 432 / 8e-147 IQ-domain 18 (.1.2) Lus10014870 [exp] 67 / 3e-12 AT2G26180 249 / 5e-74 IQ-domain 6 (.1) Lus10025593 [exp] 62 / 1e-10 AT3G59690 498 / 1e-172 IQ-domain 13 (.1) Lus10027059 [exp] 62 / 2e-10 AT3G59690 496 / 1e-171 IQ-domain 13 (.1) Lus10008269 [exp] 59 / 2e-09 AT1G01110 317 / 8e-102 IQ-domain 18 (.1.2) Lus10013522 [exp] 58 / 2e-09 AT2G26180 403 / 2e-138 IQ-domain 6 (.1) Lus10005315 [exp] 58 / 3e-09 AT5G13460 235 / 7e-73 IQ-domain 11 (.1) Lus10027435 [exp] 58 / 4e-09 AT5G62070 207 / 3e-62 IQ-domain 23 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G022500 [exp] 83 / 1e-17 AT1G01110 242 / 2e-73 IQ-domain 18 (.1.2) Potri.015G005900 [exp] 83 / 1e-17 AT4G00820 277 / 1e-86 IQ-domain 17 (.1) Potri.002G178500 [exp] 81 / 1e-16 AT4G00820 458 / 1e-156 IQ-domain 17 (.1) Potri.011G153400 [exp] 79 / 3e-16 AT4G00820 331 / 3e-107 IQ-domain 17 (.1) Potri.014G104600 [exp] 76 / 5e-15 AT4G00820 432 / 2e-146 IQ-domain 17 (.1) Potri.001G448100 [exp] 75 / 9e-15 AT4G00820 288 / 2e-90 IQ-domain 17 (.1) Potri.003G047800 [exp] 65 / 1e-11 AT3G16490 299 / 1e-98 IQ-domain 26 (.1) Potri.006G226600 [exp] 65 / 1e-11 AT2G26180 386 / 1e-131 IQ-domain 6 (.1) Potri.001G190500 [exp] 64 / 2e-11 AT3G16490 293 / 5e-96 IQ-domain 26 (.1) Potri.018G062001 [exp] 63 / 3e-11 AT2G26180 260 / 2e-85 IQ-domain 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00612 [flax] [poplar] IQ IQ calmodulin-binding motif
Representative CDS sequence Show only first row Show all	>Lus10023233 pacid=23181041 polypeptide=Lus10023233 locus=Lus10023233.g ID=Lus10023233.BGIv1.0 annot-version=v1.0 ATGGATCAACAACTTCACCAGGAAGCATCATCAGCAAGCCACTGTGATTCTGCAGCACTGTGGAGTAATCCACGACAAGAACAAGAGCAATGTTGCAACA TCATCAAAGGAAAGCCAAGTCCTGGCGGGGGGGGGGGTGGGGCGACCACCGCGGCTGCACATGCTGCCATCGCCAGCGCTCAGGCGGCCGTGGAAGCTGC TCGGCTCGCAAACAACCCTTCCGTCTTGTTCAGGAAGCATTTCGCTGCCGTGTCCATTCAGACGTCTTTCAGAGGTTATCTGGCGAGAAGGGCGTTGCGG GCTCTGAAGGGAGTGGTGAAGCTGCAAGCATTGGTGAGAGGACAGAACATGAGGAGACGAACTCAACTGACTCTCCATAGCATTCAGTCGCTACTGAGAA TCCAGGCTCGGGTGCTTGATCATCAGCGCAACACCCGTCGATTATCTTTCGAAGCTGGACAGCGCCAGATGTGGAGAGAAAACTGCAAAGATAAAGAAAG GGAAGCAGTGAGATATGCAAGTGAAGGAGACAATGATCACTACTTGGAAGGAAGATGGATTGACCACCACGACAATCGGATCAGTAGAAGCAACGCAGGG CAGAACCAAGATCGGCGGAGAGCTTCTAATAGCGACTCCAGCAATACTACTACTCCACGTTACATGGCGGCTACAGCTTCGGCCAAGTCTCGACTGATCA GGCCTCATAGCGCACCAAAACAGAGACTTTGTTCATCATCACTCACTAATTCCCCAAATCAGAAGCAACCCATTAGTACTACAGCGAAGAAACGGCTTTC TTTCCCCGACGGAGGAGATCATTATGACTACATCAGTTTAAGGAGTCCATGTTTGGAGCAGAGTGCTCTGCCCAGAATATCCACTTCATCTTCCTGTGTT TCTTCTTCACTGTGGGGATCGTCCCAGTAA
AA sequence Show only first row Show all	>Lus10023233 pacid=23181041 polypeptide=Lus10023233 locus=Lus10023233.g ID=Lus10023233.BGIv1.0 annot-version=v1.0 MDQQLHQEASSASHCDSAALWSNPRQEQEQCCNIIKGKPSPGGGGGGATTAAAHAAIASAQAAVEAARLANNPSVLFRKHFAAVSIQTSFRGYLARRALR ALKGVVKLQALVRGQNMRRRTQLTLHSIQSLLRIQARVLDHQRNTRRLSFEAGQRQMWRENCKDKEREAVRYASEGDNDHYLEGRWIDHHDNRISRSNAG QNQDRRRASNSDSSNTTTPRYMAATASAKSRLIRPHSAPKQRLCSSSLTNSPNQKQPISTTAKKRLSFPDGGDHYDYISLRSPCLEQSALPRISTSSSCV SSSLWGSSQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00820		IQD17	IQ-domain 17 (.1)		Lus10023233 [exp]	0	1
AT5G52600	MYB	AtMYB82	myb domain protein 82 (.1)		Lus10038092 [exp]	1.0	0.9706
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Lus10018655 [exp]	2.0	0.9583
AT3G48970			Heavy metal transport/detoxifi...		Lus10027470 [exp]	2.0	0.9288
AT4G24660	ZF_HD	ATHB22, MEE68, ...	ZINC FINGER HOMEODOMAIN 2, MAT...		Lus10015900 [exp]	2.6	0.9205
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Lus10007719 [exp]	3.5	0.9492
AT2G27990	HD	PNF, BLH8	POUND-FOOLISH, BEL1-like homeo...		Lus10016110 [exp]	5.0	0.9240
AT2G23950			Leucine-rich repeat protein ki...		Lus10015484 [exp]	8.7	0.8941
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10038189 [exp]	9.2	0.8799
AT1G11120			unknown protein		Lus10018564 [exp]	9.4	0.9020
AT2G39870			unknown protein		Lus10040247 [exp]	11.0	0.9076

Compare expression of checked genes

Lus10023233 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.