Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24430 679 / 0 Calcium-dependent protein kinase (CDPK) family protein (.1) AT3G49370 654 / 0 Calcium-dependent protein kinase (CDPK) family protein (.1) AT2G46700 649 / 0 ATCRK3 CDPK-related kinase 3 (.1.2) AT3G50530 616 / 0 CRK CDPK-related kinase (.1.2) AT2G41140 614 / 0 CRK1, ATCRK1, ATCBK3 CDPK-related kinase 1 (.1) AT3G56760 611 / 0 Protein kinase superfamily protein (.1) AT3G19100 593 / 0 Protein kinase superfamily protein (.1) AT1G49580 590 / 0 Calcium-dependent protein kinase (CDPK) family protein (.1) AT2G17890 436 / 4e-147 CPK16 calcium-dependent protein kinase 16 (.1) AT5G66210 423 / 5e-143 CPK28 calcium-dependent protein kinase 28 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008875 [exp] 989 / 0 AT5G24430 800 / 0.0 Calcium-dependent protein kinase (CDPK) family protein (.1) Lus10002966 [exp] 627 / 0 AT3G50530 1006 / 0.0 CDPK-related kinase (.1.2) Lus10025270 [exp] 603 / 0 AT3G50530 825 / 0.0 CDPK-related kinase (.1.2) Lus10009342 [exp] 496 / 2e-171 AT3G50530 695 / 0.0 CDPK-related kinase (.1.2) Lus10028459 [exp] 431 / 5e-146 AT2G17890 858 / 0.0 calcium-dependent protein kinase 16 (.1) Lus10041914 [exp] 432 / 3e-145 AT2G17890 875 / 0.0 calcium-dependent protein kinase 16 (.1) Lus10009078 [exp] 343 / 2e-111 AT2G46700 451 / 2e-153 CDPK-related kinase 3 (.1.2) Lus10000889 [exp] 343 / 2e-111 AT5G12180 907 / 0.0 calcium-dependent protein kinase 17 (.1) Lus10036050 [exp] 342 / 8e-111 AT5G19360 908 / 0.0 calcium-dependent protein kinase 34 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G023300 [exp] 782 / 0 AT5G24430 811 / 0.0 Calcium-dependent protein kinase (CDPK) family protein (.1) Potri.014G103500 [exp] 703 / 0 AT2G46700 840 / 0.0 CDPK-related kinase 3 (.1.2) Potri.002G176700 [exp] 698 / 0 AT2G46700 835 / 0.0 CDPK-related kinase 3 (.1.2) Potri.005G135900 [exp] 623 / 0 AT3G50530 954 / 0.0 CDPK-related kinase (.1.2) Potri.007G040800 [exp] 619 / 0 AT3G50530 943 / 0.0 CDPK-related kinase (.1.2) Potri.016G035500 [exp] 617 / 0 AT2G41140 965 / 0.0 CDPK-related kinase 1 (.1) Potri.004G143700 [exp] 610 / 0 AT3G50530 843 / 0.0 CDPK-related kinase (.1.2) Potri.006G040500 [exp] 605 / 0 AT2G41140 866 / 0.0 CDPK-related kinase 1 (.1) Potri.009G105700 [exp] 576 / 0 AT3G50530 801 / 0.0 CDPK-related kinase (.1.2) Potri.007G057600 [exp] 427 / 1e-143 AT5G66210 869 / 0.0 calcium-dependent protein kinase 28 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10023234 pacid=23181019 polypeptide=Lus10023234 locus=Lus10023234.g ID=Lus10023234.BGIv1.0 annot-version=v1.0 ATGGGCCAGTGTTGTGCTAAGGAAGTATCAGGTCTGTCCGATCGGCTCCCACAATCTTCCTCCTCCTTCAATAACGACGCTGCCGGAAGCCGGAACCACG CCAAGACTCCTGCATCGCCGGCCCCAACCACTCCTGTATCCGGCCACTCTTCCTCCAATCACGCTAACGTCTACGCTGCTAGTCCCTTCCACAGCCCCTT GCCGGCGGGAGTTCCGCCGTCGCCTTCTCCGTCCGGGACTCCAGGTAGGAAGTTCAAATGGCCACTGCCGCCTCCTTCTCCGGCGAAGCCGATCATGCGG ATGCTGCGGAAGAAGGGGCCGACTAAGAAAACTCCCAAGCAAGGTCCGATTCCTGAACACGAGGAAGGCGGCGGCGGCGGCGGTGGAGATGAGAGCGACG TCCCGCTTGATAAGAATTTCGGTTACCCGAAGAACATTGCGGCCAAGTATGAACTCGGGAAAGAGGTCGGCAGAGGGCATTTCGGTCATACTTGCTGGGC TAAGGGCAAGAAAGGCGATCTCAAGGGCGAATCCGTCGCAGTCAAGGTCATTTCCAAGGCCAAGATGACAACAGCAATCGCCATTGAAGATGTCCGTCGG GAGGTGAAGATATTGAAGTCATTATGCGGACATAAGCACATGATAAGATTTCATGATGCGTTTGAAGATGCCAACAATGTCTATATTGTTATGGAATTAT GTGAAGGCGGAGAACTTCTTGACAGAATTTTATCAAGAGGTGGGAGGTACACTGAGGATGACGCAAAAGCCATTGTTATTCAAATTCTAGGTGTAGTTTC CTACTGTCATCTTCAGGGTGTTGTACATCGTGATTTAAAACCTGAGAACTTTTTGTTCACTACTAAAGACGAGGATGCGCCAATGAAGATGATCGATTTT GGCCTTTCTGATTACGTTAGACCAGAACAACGTCTTAATGATATTGTTGGTAGTGCATACTATGTTGCACCTGAAGTGCTCCACCGATCCTACAGCGTCG AGGCAGATATGTGGAGTATTGGCGTGATAACTTACATACTATTATGTGGGAGCAGACCTTTCTGGGCCCGCACTGAATCAGGAATTTTTCGGTCTGTCTT GAGAGCTGATCCTAACTTCAACGACTCGCCGTGGCCCTCAGTAACACCAGAAGCTAAGGATTTCGTAAAAAGACTTCTGAACAAGGACCACAGAAAAAGA ATGACTGCTGCCCAGGCGCTTTCTCATCCATGGATAAGAAATGTAGTCCCAGAGGTTCCTTTGGATATCTTTATATTCAAGACTGTTAAGTCATATGTTC GCGCCACTCCCTTCAGACGTGCTGCATTGAAGTCTCTCTCGAAAGCTATTCCTGAGGACGAACTTGTCTATCTGAGGACTCAATTTGAGCTCTTAGAACC CAAAGATGGTCATTTGTCCCTTAACAATTTCAGAGTGGCGTTAAACCGAAATGTCACTGATGCGATGAAAGAATCGAGAGTTCTTGATATCCTACACATG CTCGAACCACTCTCTTACAAGAAAATAGGGTTCGAGGAATTCTGCGCCGCGGCTATAAGTACATATCAGCTTGAAGCCCTTGAAGGGTGGGAGAAGATAG CTAAAACAGCATTCGATCATTTCGAACAAGAAGGAAACCGAGTCATATCGGTGCAGGAACTGGCACTAGTAAGTTACAACACAACCAAATTGTGGTCAAA TGGGCTAAGTGTAGAGTCCGAGTTGAGTGCTGAACCGATTTCGATGTGCAGGAAATGA
AA sequence Show only first row Show all	>Lus10023234 pacid=23181019 polypeptide=Lus10023234 locus=Lus10023234.g ID=Lus10023234.BGIv1.0 annot-version=v1.0 MGQCCAKEVSGLSDRLPQSSSSFNNDAAGSRNHAKTPASPAPTTPVSGHSSSNHANVYAASPFHSPLPAGVPPSPSPSGTPGRKFKWPLPPPSPAKPIMR MLRKKGPTKKTPKQGPIPEHEEGGGGGGGDESDVPLDKNFGYPKNIAAKYELGKEVGRGHFGHTCWAKGKKGDLKGESVAVKVISKAKMTTAIAIEDVRR EVKILKSLCGHKHMIRFHDAFEDANNVYIVMELCEGGELLDRILSRGGRYTEDDAKAIVIQILGVVSYCHLQGVVHRDLKPENFLFTTKDEDAPMKMIDF GLSDYVRPEQRLNDIVGSAYYVAPEVLHRSYSVEADMWSIGVITYILLCGSRPFWARTESGIFRSVLRADPNFNDSPWPSVTPEAKDFVKRLLNKDHRKR MTAAQALSHPWIRNVVPEVPLDIFIFKTVKSYVRATPFRRAALKSLSKAIPEDELVYLRTQFELLEPKDGHLSLNNFRVALNRNVTDAMKESRVLDILHM LEPLSYKKIGFEEFCAAAISTYQLEALEGWEKIAKTAFDHFEQEGNRVISVQELALVSYNTTKLWSNGLSVESELSAEPISMCRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24430			Calcium-dependent protein kina...		Lus10023234 [exp]	0	1
AT5G60710			Zinc finger (C3HC4-type RING f...		Lus10016102 [exp]	4.1	0.6584
AT3G12020			P-loop containing nucleoside t...		Lus10029307 [exp]	9.3	0.6486
AT2G43430		GLY1, GLX2-1	GLYOXALASE II, glyoxalase 2-1 ...		Lus10033662 [exp]	10.6	0.6370
AT5G58430		ATEXO70B1	exocyst subunit exo70 family p...		Lus10011859 [exp]	21.5	0.6160
AT5G05840			Protein of unknown function (D...		Lus10004669 [exp]	23.5	0.6280
AT5G13820		HPPBF-1, ATTBP1...	H-PROTEIN PROMOTE, telomeric D...		Lus10023406 [exp]	23.5	0.6532
AT2G18730		ATDGK3	diacylglycerol kinase 3 (.1)		Lus10008907 [exp]	27.9	0.6089
AT4G21760		BGLU47	beta-glucosidase 47 (.1)		Lus10032660 [exp]	31.8	0.6241
AT3G62220			Protein kinase superfamily pro...		Lus10010072 [exp]	45.6	0.6082
AT1G53050			Protein kinase superfamily pro...		Lus10031651 [exp]	47.4	0.6106

Compare expression of checked genes

Lus10023234 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.