Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08139 193 / 3e-57 RING/U-box superfamily protein (.1) AT5G60820 158 / 8e-44 RING/U-box superfamily protein (.1) AT3G02340 132 / 2e-34 RING/U-box superfamily protein (.1) AT5G15820 127 / 5e-33 RING/U-box superfamily protein (.1) AT3G19950 111 / 3e-27 RING/U-box superfamily protein (.1) AT2G40830 101 / 9e-24 RHC1A RING-H2 finger C1A (.1.2.3) AT5G01980 101 / 4e-23 RING/U-box superfamily protein (.1) AT1G55530 99 / 7e-23 RING/U-box superfamily protein (.1) AT5G64920 98 / 2e-22 CIP8 COP1-interacting protein 8 (.1) AT5G20910 94 / 2e-21 AIP2 ABI3-interacting protein 2, RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008874 [exp] 739 / 0 AT5G08139 198 / 3e-59 RING/U-box superfamily protein (.1) Lus10010179 [exp] 119 / 7e-31 AT3G19950 285 / 6e-96 RING/U-box superfamily protein (.1) Lus10031422 [exp] 110 / 4e-27 AT5G64920 210 / 5e-66 COP1-interacting protein 8 (.1) Lus10040783 [exp] 95 / 1e-21 AT5G59550 228 / 1e-72 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10017383 [exp] 89 / 2e-21 AT3G19950 127 / 8e-37 RING/U-box superfamily protein (.1) Lus10030755 [exp] 93 / 8e-21 AT2G40830 336 / 2e-115 RING-H2 finger C1A (.1.2.3) Lus10040278 [exp] 92 / 8e-21 AT5G59550 224 / 2e-71 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10004712 [exp] 94 / 9e-21 AT5G59550 294 / 6e-97 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10022967 [exp] 92 / 2e-20 AT1G60360 153 / 3e-45 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G047900 [exp] 351 / 2e-117 AT5G08139 201 / 3e-60 RING/U-box superfamily protein (.1) Potri.012G065300 [exp] 347 / 1e-115 AT5G08139 178 / 4e-51 RING/U-box superfamily protein (.1) Potri.012G036700 [exp] 130 / 3e-34 AT3G19950 273 / 5e-90 RING/U-box superfamily protein (.1) Potri.015G028400 [exp] 129 / 1e-33 AT3G19950 256 / 2e-83 RING/U-box superfamily protein (.1) Potri.005G090500 [exp] 119 / 2e-30 AT3G19950 279 / 4e-93 RING/U-box superfamily protein (.1) Potri.007G074014 [exp] 117 / 1e-29 AT3G19950 278 / 5e-93 RING/U-box superfamily protein (.1) Potri.016G141600 [exp] 104 / 1e-24 AT5G01980 226 / 1e-69 RING/U-box superfamily protein (.1) Potri.006G112100 [exp] 104 / 7e-24 AT5G01980 293 / 1e-92 RING/U-box superfamily protein (.1) Potri.003G223200 [exp] 100 / 1e-22 AT5G56340 301 / 3e-99 RING/U-box superfamily protein (.1) Potri.001G243300 [exp] 99 / 1e-22 AT3G46620 239 / 8e-76 zinc finger (C3HC4-type RING finger) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10023235 pacid=23181040 polypeptide=Lus10023235 locus=Lus10023235.g ID=Lus10023235.BGIv1.0 annot-version=v1.0 ATGAGTTATAAGACGTTCCCCATGCCGAGAATCGACAACTCGATATTTGACTCGCTGAGTCAACTCGGGCAGGAAAGAAATTCTAACAATGACGACGCTC TCTCTGATGCCGACTCCGTTATTCTGAACGGTGGGGCGGATCTCTTGGACTGTGAGAATCAAGTGCGTTTCGTTATGGATTTAATTCATCAGCGTGTTGA TCAGTCTCAGGTAATGGGCCACGATTCCCATTTGTTTTCTGACGCGTTTGATGAATCTACCTTTGGGGTTATAGATGTGGATTCTTCTGTCCGGAATTTA GAACACGATTTAGGTTTAGGGATAGGGTTTGGTTTAGGCTCTCAGGAGAACTTCGGGTTCCAAGATGTACACCTGAATGAAGAAAACAGCAATGTCGGGT ATCGTTTCAACGCTCTTGTTGAGGATATTATTGATGATGTTGATGATGATGGTTTCTTTGTTGAGAGGAGGGTTTCTAGTGGTCATAGAGATGCAGTTCG GATTTCTGGGTTTCTATCGGATACAGAGTCCGACGAGAATGAGGATTCATTAGCTACAGCTTTCCATTCTCGGGTTGAATATGGATGGGATGATGGACAC TTAGAAAGCGGTGGCCATTGTGATTACTGGAGTGGAGAAGATGCCAACGATGATGATGATGCTATTACATTTCCCCTTTGCTGGAATTCACTTCGGTTGG AGGATCAGAGGGATCAGAACGACGATTTCGAGTGGGAGGAGATTGATGGCCGTGTCGATGAACGAGAGGTGTTCAGCGTGTTTCTTGACGACGATGATGA TGGTGAGGCCTCCGTATCACTCTCGCTCTCTCCCATCATTGCTCCCGAAGATATGGTTAGCGTGGACCGAGTCCGAGGACCTGCGGGGAATCTGGAGTGG GAGGTGTTGCTGGATACTGCAACCTTCGAATCATTTCCCGAGCAGGAACAAGATCGGGACTTGCGCGGTCAAGATGACTTCAACTACACATATGAAACGG TGTTCGGCCACTTTGCTGAGATGGATACAATTCTCACAGGTCAGCCTCCCGCTGCAAGATCGGCAGTCGAGAGGCTTCCTTCACTTGTGCTGGTCAAAGA AGATTTGGGGACTGATAACTCTACATGTGCGGTTTGTAAGGATGATATGAACGTGGGAGAGAAGGCGAAGTTGCTTCCTTGCACGCACCGGTATCACGAG GATTGCATCGTTCCTTGGCTGAAAATTCGGAACACTTGCCCGGTATGCCGGCATGAATTGCCTACCGATGATGCGGATTACGAGAGGAGGAAGACGGCTG GGCGTCACCTGTGA
AA sequence Show only first row Show all	>Lus10023235 pacid=23181040 polypeptide=Lus10023235 locus=Lus10023235.g ID=Lus10023235.BGIv1.0 annot-version=v1.0 MSYKTFPMPRIDNSIFDSLSQLGQERNSNNDDALSDADSVILNGGADLLDCENQVRFVMDLIHQRVDQSQVMGHDSHLFSDAFDESTFGVIDVDSSVRNL EHDLGLGIGFGLGSQENFGFQDVHLNEENSNVGYRFNALVEDIIDDVDDDGFFVERRVSSGHRDAVRISGFLSDTESDENEDSLATAFHSRVEYGWDDGH LESGGHCDYWSGEDANDDDDAITFPLCWNSLRLEDQRDQNDDFEWEEIDGRVDEREVFSVFLDDDDDGEASVSLSLSPIIAPEDMVSVDRVRGPAGNLEW EVLLDTATFESFPEQEQDRDLRGQDDFNYTYETVFGHFAEMDTILTGQPPAARSAVERLPSLVLVKEDLGTDNSTCAVCKDDMNVGEKAKLLPCTHRYHE DCIVPWLKIRNTCPVCRHELPTDDADYERRKTAGRHL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08139			RING/U-box superfamily protein...		Lus10023235 [exp]	0	1
AT4G25670			unknown protein		Lus10038842 [exp]	1.0	0.9032
AT1G80400			RING/U-box superfamily protein...		Lus10011475 [exp]	2.4	0.8593
AT3G19553			Amino acid permease family pro...		Lus10040966 [exp]	2.4	0.8711
AT3G26000			Ribonuclease inhibitor (.1)		Lus10006438 [exp]	4.0	0.8546
AT3G10210			SEC14 cytosolic factor family ...		Lus10031044 [exp]	6.0	0.8252
AT5G54855			Pollen Ole e 1 allergen and ex...		Lus10001821 [exp]	6.5	0.8580
AT4G25672		CPuORF12	conserved peptide upstream ope...		Lus10027512 [exp]	6.5	0.8667
AT4G32530			ATPase, F0/V0 complex, subunit...		Lus10000694 [exp]	6.9	0.8613
AT3G12800		SDRB, DECR	short-chain dehydrogenase-redu...		Lus10031170 [exp]	7.1	0.8598
AT1G32400		TOM2A	tobamovirus multiplication 2A ...		Lus10003011 [exp]	7.3	0.8499

Compare expression of checked genes

Lus10023235 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.