Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49350 495 / 3e-171 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT5G24390 472 / 2e-162 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT5G41940 435 / 1e-147 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT5G53570 428 / 5e-145 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT5G52580 138 / 1e-34 RabGAP/TBC domain-containing protein (.1.2) AT4G28550 125 / 5e-31 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT4G27100 122 / 6e-30 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT2G20440 120 / 2e-29 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT5G54780 120 / 2e-29 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT3G59570 122 / 3e-29 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008872 [exp] 837 / 0 AT5G41940 582 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10022356 [exp] 625 / 0 AT3G49350 650 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10033232 [exp] 509 / 1e-176 AT5G41940 590 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10008839 [exp] 358 / 6e-119 AT3G49350 382 / 3e-128 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10027697 [exp] 138 / 2e-36 AT5G52580 526 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Lus10039968 [exp] 140 / 2e-35 AT5G52580 867 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Lus10038091 [exp] 139 / 6e-35 AT5G52580 938 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Lus10006646 [exp] 136 / 7e-34 AT5G52580 939 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Lus10043064 [exp] 130 / 3e-32 AT2G20440 630 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G007400 [exp] 588 / 0 AT5G41940 596 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.012G024500 [exp] 573 / 0 AT3G49350 601 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.003G146300 [exp] 466 / 2e-159 AT5G41940 624 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.001G084300 [exp] 459 / 6e-157 AT5G41940 603 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.006G066300 [exp] 137 / 2e-34 AT5G52580 925 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Potri.018G127500 [exp] 136 / 6e-34 AT5G52580 917 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Potri.001G419100 [exp] 133 / 1e-33 AT5G54780 663 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.011G135300 [exp] 129 / 4e-32 AT4G27100 667 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Potri.007G132900 [exp] 126 / 1e-30 AT2G43490 808 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6) Potri.017G023200 [exp] 125 / 4e-30 AT2G43490 795 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00566 [flax] [poplar] RabGAP-TBC Rab-GTPase-TBC domain
Representative CDS sequence Show only first row Show all	>Lus10023237 pacid=23181037 polypeptide=Lus10023237 locus=Lus10023237.g ID=Lus10023237.BGIv1.0 annot-version=v1.0 ATGCTCACTCCCATCCCCAACTTCAGCCTCAAAGCATTTCTCCACATCTCCGTCAGCGGCGGGAGTGGAGGCGGTGGCGGTCGATCAGCCTGGGCACTGG CGGCTCCGCACTCTCCTTCATCACCTGCAGTCGTAGCCGTCACTGCCTTGGCCGGAATCGCAGTTGTCGCCGCCATTTTCTACACCACTAAAAGGGGGCG TCTGGCATCACCTTGGTCACGACGGAAAAGAAAACATGTCCTTTCTCCTCAAGATTGGAGTGAATTATTTACATCTGATGGGAAACTCCGTGATGGAGTC AAGTTTCTGAAGAAAGTTCGCAGCGGAGGTGTTGATCCAAGTATAAGGCCAGAAGTTTGGCCATTTCTGCTTGGAGTCTACGAATTGAACAGTACCGGAG ATGAAAGGGAGCTTCTTAGAACTGAAAAAAGGAAAGAGTATTATAAACTTCGGCGACAGTGCCAGAGACTCCTTAGGCAAAATAGCGAGACCTCTAAAAT TAGTGAAGATGGTGAAATAGTTGAGAGTAGAGATGGTGGAAGTTCCACAGACTCTTCTAGTGATGAAGAAAAGAGTCCTCCAGTTGGTGTTCATTCAAGT GATCTATGTGCTACAGTTTCAGAAGATGATGATTCTCCTGAAAGGCAGACTAGGAGTTCGGATGCTTCTGGACTAGATTCCGAGTCATCTGAAGATTCCG AAGTGATTCAGGCTACTGCTTCAGACAAAACAAAAGAGAACGACGATAATGCTTGTTCTAACGAGAACAGCTCTACACCAGTAGCGGCACCCCAATCAAG GCGTCGGACAGTGGAAGATTTCGCCACATGGCAGCGTATCATTCGAGTTGATGCGGTACGTGCCAACCCAGAATGGATACCTTACTCCCCTATCCAGGCA TCAGTATCCGAACCCAAAGCCCAGCGCTTTGCCGAGAAAGTCGGGCTAAAAGAACACGACCATCTCGATCCCTCCCGAGTCTTCCACGCCGCACGCTTAG TCGCCATTCTCGAAGCCTACACACTGTACGACACAGAAATCGGGTACTGCCAGGGAATGAGCGACTTACTCAGCCCGATAATCGCCGTCATGCAAGAAGA CCACGAAGCCTTCTGGTGTTTCGTCGGGTTCATGAAGAAAGCCCGACACAACTTCAGGCTCGACGAGGTAGGAATCAGAAGACAGCTGAGTATAGTCTCC AAAATCATCAAATTCCAGGACTCGCATCTCTACCAGCATCTCGAGAAGCTGCAAGCGGAGGATTGTTTCTTCGTGTACAGGATGGTCGTCGTACTTTTCA GGAGAGAGTTGAGCTTCGAGCAGACGCTTTGCATGTGGGAGGTTATGTGGGCGGATCAGGCGGCCGTACGAGCCGGGATTGGGAAATCCCTACATGTGCC ACCACCGAGCGATGACCTTTTGCTGTACGCTATAGCTGCTTCGGTGCTGCAGAAGAGGAAACTGATAATAGAGAAGTATAGCAGCATGGATGAGATTCTT AGGGAGTGCAATGGCATGGCTGGGCAGCTTGATGTTTGGAAGCTCTTGGATGATGCTCATAATTTGGTGGTTAACTTGCATGACAAGATAGAGTCTTGA
AA sequence Show only first row Show all	>Lus10023237 pacid=23181037 polypeptide=Lus10023237 locus=Lus10023237.g ID=Lus10023237.BGIv1.0 annot-version=v1.0 MLTPIPNFSLKAFLHISVSGGSGGGGGRSAWALAAPHSPSSPAVVAVTALAGIAVVAAIFYTTKRGRLASPWSRRKRKHVLSPQDWSELFTSDGKLRDGV KFLKKVRSGGVDPSIRPEVWPFLLGVYELNSTGDERELLRTEKRKEYYKLRRQCQRLLRQNSETSKISEDGEIVESRDGGSSTDSSSDEEKSPPVGVHSS DLCATVSEDDDSPERQTRSSDASGLDSESSEDSEVIQATASDKTKENDDNACSNENSSTPVAAPQSRRRTVEDFATWQRIIRVDAVRANPEWIPYSPIQA SVSEPKAQRFAEKVGLKEHDHLDPSRVFHAARLVAILEAYTLYDTEIGYCQGMSDLLSPIIAVMQEDHEAFWCFVGFMKKARHNFRLDEVGIRRQLSIVS KIIKFQDSHLYQHLEKLQAEDCFFVYRMVVVLFRRELSFEQTLCMWEVMWADQAAVRAGIGKSLHVPPPSDDLLLYAIAASVLQKRKLIIEKYSSMDEIL RECNGMAGQLDVWKLLDDAHNLVVNLHDKIES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41940			Ypt/Rab-GAP domain of gyp1p su...		Lus10023237 [exp]	0	1
AT2G41310		ARR8, ATRR3	RESPONSE REGULATOR 8, response...		Lus10007885 [exp]	1.0	0.9323
AT2G43790		ATMAPK6, MAPK6,...	MAP kinase 6 (.1)		Lus10008339 [exp]	1.4	0.9083
AT3G53110		LOS4	LOW EXPRESSION OF OSMOTICALLY ...		Lus10014393 [exp]	9.6	0.9045
AT4G26690		GDPDL3, GPDL2, ...	SHAVEN 3, MUTANT ROOT HAIR 5, ...		Lus10032576 [exp]	11.0	0.9078
AT3G14067			Subtilase family protein (.1)		Lus10008116 [exp]	11.4	0.8420
AT5G15140			Galactose mutarotase-like supe...		Lus10015365 [exp]	14.3	0.8830
AT4G24490		ATRGTA1	RAB geranylgeranyl transferase...		Lus10001518 [exp]	14.5	0.8980
AT4G01650			Polyketide cyclase / dehydrase...		Lus10007203 [exp]	17.2	0.8709
AT1G21480			Exostosin family protein (.1.2...		Lus10028632 [exp]	17.7	0.8972
AT4G11820		FKP1, EMB2778, ...	FLAKY POLLEN 1, hydroxymethylg...		Lus10006348 [exp]	18.2	0.8451

Compare expression of checked genes

Lus10023237 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.