Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23880 125 / 2e-32 F-box and associated interaction domains-containing protein (.1) AT4G12560 117 / 4e-29 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT3G06240 110 / 2e-26 F-box family protein (.1) AT4G22390 92 / 3e-20 F-box associated ubiquitination effector family protein (.1) AT1G33530 84 / 2e-17 F-box family protein (.1) AT3G16210 77 / 1e-15 F-box family protein (.1) AT2G02030 74 / 2e-14 F-box family protein (.1) AT1G11270 71 / 2e-13 F-box and associated interaction domains-containing protein (.1.2.3) AT1G12870 70 / 6e-13 F-box and associated interaction domains-containing protein (.1) AT1G71320 70 / 7e-13 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008871 [exp] 640 / 0 AT4G12560 135 / 1e-35 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10008870 [exp] 515 / 0 AT3G23880 126 / 9e-33 F-box and associated interaction domains-containing protein (.1) Lus10023239 [exp] 468 / 3e-165 AT3G23880 130 / 3e-34 F-box and associated interaction domains-containing protein (.1) Lus10039024 [exp] 108 / 6e-26 AT4G12560 333 / 3e-111 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10013872 [exp] 99 / 1e-22 AT3G06240 101 / 2e-23 F-box family protein (.1) Lus10010910 [exp] 92 / 3e-20 AT3G23880 101 / 1e-23 F-box and associated interaction domains-containing protein (.1) Lus10038603 [exp] 91 / 9e-20 AT3G06240 110 / 2e-26 F-box family protein (.1) Lus10013873 [exp] 85 / 6e-18 AT3G06240 104 / 2e-24 F-box family protein (.1) Lus10038606 [exp] 84 / 2e-17 AT3G07870 112 / 1e-27 F-box and associated interaction domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G199800 [exp] 212 / 2e-64 AT3G23880 182 / 3e-53 F-box and associated interaction domains-containing protein (.1) Potri.017G058900 [exp] 141 / 2e-38 AT3G06240 132 / 2e-34 F-box family protein (.1) Potri.006G013000 [exp] 138 / 9e-37 AT4G12560 250 / 5e-79 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G035500 [exp] 124 / 2e-31 AT4G12560 271 / 3e-87 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.016G012500 [exp] 112 / 3e-27 AT4G12560 321 / 8e-107 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.010G154700 [exp] 112 / 3e-27 AT4G12560 321 / 8e-107 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G318400 [exp] 108 / 5e-26 AT3G06240 142 / 3e-38 F-box family protein (.1) Potri.017G058000 [exp] 107 / 9e-26 AT3G06240 138 / 5e-37 F-box family protein (.1) Potri.006G013200 [exp] 103 / 3e-24 AT4G12560 289 / 4e-94 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.008G006800 [exp] 98 / 2e-22 AT4G12560 100 / 4e-23 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023238 pacid=23180928 polypeptide=Lus10023238 locus=Lus10023238.g ID=Lus10023238.BGIv1.0 annot-version=v1.0 ATGCCGACGCTGATACCTGACGTTGCCGGCGACGACGAAGCAACCTCCACCGGCGAGCCACATCAACTTCCGCCTTCCTCCGCCACCGTCCTCCCCACGG ACTACATCGGCGAAATCCTCACTCGTCTGCCAGTCAAACCCCTGTTACGCTTCAAATCCGTCTCCAAATCTTTCAAATCCCTAATCTCCGGCAGATATTT CGCCAAACACCACCTGAATCGCCTCAAATCCTCCTCCAATAACCTCCCCGGAAATCCACTCCTCCTTATCTCACCCGCCTCAAAACTCGGCTACAGCTCA TGTACTCTGAACTCTCTGTACCAGATCGCACCGCCACATCCCAGCTTCACCGACCTCGACCACACCCCGACTATAATCGAACCGCATACCAAACCTTATT GGCTCATCGGATCTTGCGACGGATTGATCTGCGTAGCTGTTAAGCAACGATCCGTAGTTCTATGGAATCCATCCACCAGAGCTTTCTCCACTCTCCCGCC ACAATTGGATGATGATGGTGAACAGAGCAGGAGATCATTGTACTCGGTTTTTGGGTTCGGTTACGACGGTCTGACCGACGATTACAAGGTGGTTTCCATT TCCCGCTACCAGAACAAAGACGCTCCTTTGGGGACTGTTCAGGTATGTTCAGTCAAGTCCAGGGTTTGGAAGAGGATTGAAGATTTCAAATGCGGCGTTC CCTGCAATTCCCCTGGGAAATACGTGAGCAACACTTTGAATTGGGTGATGGATAACGAGTCGAGCTCGATCGTGTCGCTCAACTTGCACAATTTGACATA TCGAGAAGTGATGCAGCCAGTGGGGGAGGATACAATTATCAGCTACAAACAGAAGGCAATCGGGGTTGTGGAAGATTGTCTGTGCGTGATGTATCATCAC AGCGGGGAGTACTCGGATTTGTGGGTGATGAAAGAGCTTGGGGTGGTGGAGTCATGGACTAAGTTGTTCAGAATTGATATGCGGCGGGATGATGAGCTTC ATCAGCTGGAGTATTTCGCCCCGGTTTATGTCTACGGCGGGAAAGCTCTGTTGTGGTTGTGGTCTAGCATTGCTGTGTATAGTTATGAGGATGAATCTGT AGTGTATTGGTCTAACGATGTTTGGTCCTGTCATGTTTACATCGAGAGCTTGGTTTCTCCTGGATTGGGAATCCACTAA
AA sequence Show only first row Show all	>Lus10023238 pacid=23180928 polypeptide=Lus10023238 locus=Lus10023238.g ID=Lus10023238.BGIv1.0 annot-version=v1.0 MPTLIPDVAGDDEATSTGEPHQLPPSSATVLPTDYIGEILTRLPVKPLLRFKSVSKSFKSLISGRYFAKHHLNRLKSSSNNLPGNPLLLISPASKLGYSS CTLNSLYQIAPPHPSFTDLDHTPTIIEPHTKPYWLIGSCDGLICVAVKQRSVVLWNPSTRAFSTLPPQLDDDGEQSRRSLYSVFGFGYDGLTDDYKVVSI SRYQNKDAPLGTVQVCSVKSRVWKRIEDFKCGVPCNSPGKYVSNTLNWVMDNESSSIVSLNLHNLTYREVMQPVGEDTIISYKQKAIGVVEDCLCVMYHH SGEYSDLWVMKELGVVESWTKLFRIDMRRDDELHQLEYFAPVYVYGGKALLWLWSSIAVYSYEDESVVYWSNDVWSCHVYIESLVSPGLGIH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23880			F-box and associated interacti...		Lus10023238 [exp]	0	1
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Lus10029405 [exp]	1.7	0.9185
AT2G02130		PDF2.3, LCR68	low-molecular-weight cysteine-...		Lus10004289 [exp]	4.5	0.9057
AT3G23400		FIB4	fibrillin 4, Plastid-lipid ass...		Lus10021209 [exp]	4.6	0.8607
AT3G48090		ATEDS1, EDS1	enhanced disease susceptibilit...		Lus10042937 [exp]	5.2	0.8560
AT5G20700			Protein of unknown function (D...		Lus10027595 [exp]	5.9	0.8787
AT4G22220		ATISU1, ISU1	SufE/NifU family protein (.1)		Lus10002383 [exp]	6.9	0.8710
AT5G20190			Tetratricopeptide repeat (TPR)...		Lus10002166 [exp]	8.2	0.8838
AT4G36800		RCE1	RUB1 conjugating enzyme 1 (.1....		Lus10010143 [exp]	8.8	0.8679
AT3G23880			F-box and associated interacti...		Lus10008870 [exp]	8.9	0.8824
AT4G02405			S-adenosyl-L-methionine-depend...		Lus10015003 [exp]	10.8	0.8860

Compare expression of checked genes

Lus10023238 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.