Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23880 124 / 7e-32 F-box and associated interaction domains-containing protein (.1) AT3G06240 107 / 2e-25 F-box family protein (.1) AT4G12560 104 / 1e-24 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT4G22390 89 / 3e-19 F-box associated ubiquitination effector family protein (.1) AT4G19940 74 / 2e-14 F-box and associated interaction domains-containing protein (.1) AT4G19930 69 / 2e-12 F-box and associated interaction domains-containing protein (.1) AT1G70380 62 / 2e-10 F-box and associated interaction domains-containing protein (.1) AT4G38870 62 / 2e-10 F-box and associated interaction domains-containing protein (.1) AT4G09190 62 / 3e-10 F-box and associated interaction domains-containing protein (.1) AT3G17710 60 / 9e-10 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008870 [exp] 608 / 0 AT3G23880 126 / 9e-33 F-box and associated interaction domains-containing protein (.1) Lus10023238 [exp] 464 / 2e-163 AT3G23880 126 / 6e-33 F-box and associated interaction domains-containing protein (.1) Lus10008871 [exp] 462 / 6e-163 AT4G12560 135 / 1e-35 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10039024 [exp] 103 / 3e-24 AT4G12560 333 / 3e-111 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10038603 [exp] 89 / 6e-19 AT3G06240 110 / 2e-26 F-box family protein (.1) Lus10039593 [exp] 83 / 2e-18 AT4G12560 75 / 9e-16 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10013872 [exp] 81 / 2e-16 AT3G06240 101 / 2e-23 F-box family protein (.1) Lus10031020 [exp] 78 / 2e-15 AT3G10430 88 / 3e-19 F-box and associated interaction domains-containing protein (.1) Lus10010910 [exp] 76 / 8e-15 AT3G23880 101 / 1e-23 F-box and associated interaction domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G199800 [exp] 201 / 3e-60 AT3G23880 182 / 3e-53 F-box and associated interaction domains-containing protein (.1) Potri.006G013000 [exp] 128 / 5e-33 AT4G12560 250 / 5e-79 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.017G058900 [exp] 123 / 2e-31 AT3G06240 132 / 2e-34 F-box family protein (.1) Potri.001G035500 [exp] 121 / 1e-30 AT4G12560 271 / 3e-87 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G318400 [exp] 103 / 1e-24 AT3G06240 142 / 3e-38 F-box family protein (.1) Potri.006G013200 [exp] 103 / 2e-24 AT4G12560 289 / 4e-94 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G318300 [exp] 100 / 4e-23 AT3G06240 140 / 7e-38 F-box family protein (.1) Potri.017G058000 [exp] 98 / 2e-22 AT3G06240 138 / 5e-37 F-box family protein (.1) Potri.010G154700 [exp] 96 / 1e-21 AT4G12560 321 / 8e-107 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.016G012500 [exp] 96 / 1e-21 AT4G12560 321 / 8e-107 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0162 [flax] [poplar] FBA PF07734 [flax] [poplar] FBA_1 F-box associated
Representative CDS sequence Show only first row Show all	>Lus10023239 pacid=23181098 polypeptide=Lus10023239 locus=Lus10023239.g ID=Lus10023239.BGIv1.0 annot-version=v1.0 ATGCCTGACGTCGCCGGCGACGACCCAGCAGCCTCCACCTCCGCCACAGTTCTCACTACAGACTCCATCATCGAAATCCTCACTCGCCTCCCAGTAAAAC CCCTCATCCGCTTCAAATCCGTCTCCAAATCATTCAAATCCCTAATCTCCACCACAGAATTCATCAACCACCACCTGAACCGCCGCAAATCCTCCGATAA CAAAAGCCTCCGAAACCAACTCCTCCTCGTTCCGTCCACCTCAAAGCTCGGGTACAGCTCCTGTACTCTGGACTCTCTGTACGAGATCCCGCCGCGTCCA AGTTTCGCGGACCTCGATCAATCGCCGTTTCGAATCGAACCGGATCGGAAACCGTATAGGCTCGTCGGATCTTGCAACGGATTAGTCTGCGTAGCTGTTA AGAAATGGTCGGTAGCTTTGTGGAATCCGTCCACTAGAGATTTCTCCACACTCCCGGAGTTGGATTATGATGGTGGTAAACAGGGGAGGAGATGCTACCC GGTTTTTGGGTTCGGTTATGATGGTCTGGCCGACGATTATAAGGTGGTTTCGGTTTCCTGCTACCCGAACAAAGACGTCAGAACAGTTGCTGCAGCAGCG CCGTCAGTTGTTGTTCAGGTATATTCAACCAAGTCGAGGGTTTGGAAGAGGATCGAAGATTTCAAATTCGGCCTCCCCTTCAACTACCCAGGGAAATACC TGAACAACACTCTGAATTTCCTGATGCACAACGAATCAAGCTCGATCGTGTCACTCGACTTACACAGTTCAACATATCGAGAAGTAACGCAGCCTGAAGA CTCGAAAGAGGACGATACAATCATTAGCCACCACCAGAAGACCATCGGGGTAGTGGAAGACTGCCTGTGCGTGTTGTACCACCGACACGGGGAGTACACT GATCTATGGGTGATGAAAGAGTTCGGAGTGATGGAATCGTGGACCAAATTGTTCCGAGTCGATATAAGGGATCATGAGGAGCTTCGTTGGCTGCAGCATT TCATGCCGGTTTATTTCTGCAGCGGGAAAGCTCTGCTGTGGTTATGGTCTAGCATTGCTGTGTATAGTTACGAGGATGGTTGTGTTCTGTATCGGTCGTC TAATGGTGTTGGGTCTTGTCAGATTTATTTGGAGAGCTTGGTTTCTCCTGAATCGGAAAACCAGTGA
AA sequence Show only first row Show all	>Lus10023239 pacid=23181098 polypeptide=Lus10023239 locus=Lus10023239.g ID=Lus10023239.BGIv1.0 annot-version=v1.0 MPDVAGDDPAASTSATVLTTDSIIEILTRLPVKPLIRFKSVSKSFKSLISTTEFINHHLNRRKSSDNKSLRNQLLLVPSTSKLGYSSCTLDSLYEIPPRP SFADLDQSPFRIEPDRKPYRLVGSCNGLVCVAVKKWSVALWNPSTRDFSTLPELDYDGGKQGRRCYPVFGFGYDGLADDYKVVSVSCYPNKDVRTVAAAA PSVVVQVYSTKSRVWKRIEDFKFGLPFNYPGKYLNNTLNFLMHNESSSIVSLDLHSSTYREVTQPEDSKEDDTIISHHQKTIGVVEDCLCVLYHRHGEYT DLWVMKEFGVMESWTKLFRVDIRDHEELRWLQHFMPVYFCSGKALLWLWSSIAVYSYEDGCVLYRSSNGVGSCQIYLESLVSPESENQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23880			F-box and associated interacti...		Lus10023239 [exp]	0	1
AT2G36430			Plant protein of unknown funct...		Lus10027720 [exp]	1.0	0.8789
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Lus10009053 [exp]	2.0	0.8229
AT3G18710		ATPUB29	ARABIDOPSIS THALIANA PLANT U-B...		Lus10029771 [exp]	3.2	0.8123
AT2G47890	CO	COL13	B-box type zinc finger protein...		Lus10040900 [exp]	3.5	0.8215
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10032976 [exp]	5.7	0.8227
AT2G35200			unknown protein		Lus10036051 [exp]	7.0	0.8096
AT5G01370		ACI1	ALC-interacting protein 1 (.1)		Lus10002480 [exp]	8.1	0.7626
AT1G49230			RING/U-box superfamily protein...		Lus10006786 [exp]	8.6	0.7594
AT4G12010			Disease resistance protein (TI...		Lus10015350 [exp]	10.8	0.7957
AT3G05200		ATL6	RING/U-box superfamily protein...		Lus10015167 [exp]	18.3	0.7798

Compare expression of checked genes

Lus10023239 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.