Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53550 931 / 0 ATYSL3, YSL3 YELLOW STRIPE like 3 (.1.2) AT5G24380 917 / 0 ATYSL2, YSL2 YELLOW STRIPE like 2 (.1) AT4G24120 837 / 0 ATYSL1, YSL1 YELLOW STRIPE like 1 (.1) AT1G65730 727 / 0 YSL7 YELLOW STRIPE like 7 (.1) AT3G27020 700 / 0 YSL6 YELLOW STRIPE like 6 (.1) AT1G48370 687 / 0 YSL8 YELLOW STRIPE like 8 (.1) AT3G17650 683 / 0 YSL5, PDE321 pigment defective 321, YELLOW STRIPE like 5 (.1) AT5G41000 676 / 0 YSL4 YELLOW STRIPE like 4 (.1) AT5G45450 224 / 4e-69 Oligopeptide transporter OPT superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008869 [exp] 1239 / 0 AT5G53550 994 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10022360 [exp] 960 / 0 AT5G53550 1044 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10008836 [exp] 917 / 0 AT5G53550 1000 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10022358 [exp] 875 / 0 AT5G53550 939 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10033231 [exp] 840 / 0 AT4G24120 1011 / 0.0 YELLOW STRIPE like 1 (.1) Lus10032950 [exp] 840 / 0 AT5G53550 912 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10000879 [exp] 839 / 0 AT4G24120 1006 / 0.0 YELLOW STRIPE like 1 (.1) Lus10013323 [exp] 750 / 0 AT1G65730 1127 / 0.0 YELLOW STRIPE like 7 (.1) Lus10034177 [exp] 743 / 0 AT1G65730 1115 / 0.0 YELLOW STRIPE like 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G055224 [exp] 920 / 0 AT5G53550 1008 / 0.0 YELLOW STRIPE like 3 (.1.2) Potri.001G084400 [exp] 829 / 0 AT4G24120 932 / 0.0 YELLOW STRIPE like 1 (.1) Potri.001G082400 [exp] 817 / 0 AT4G24120 813 / 0.0 YELLOW STRIPE like 1 (.1) Potri.012G024700 [exp] 776 / 0 AT5G53550 858 / 0.0 YELLOW STRIPE like 3 (.1.2) Potri.017G151800 [exp] 718 / 0 AT1G65730 935 / 0.0 YELLOW STRIPE like 7 (.1) Potri.017G151600 [exp] 716 / 0 AT3G17650 921 / 0.0 pigment defective 321, YELLOW STRIPE like 5 (.1) Potri.017G150500 [exp] 716 / 0 AT1G65730 936 / 0.0 YELLOW STRIPE like 7 (.1) Potri.004G069200 [exp] 713 / 0 AT1G65730 964 / 0.0 YELLOW STRIPE like 7 (.1) Potri.004G069300 [exp] 700 / 0 AT3G17650 897 / 0.0 pigment defective 321, YELLOW STRIPE like 5 (.1) Potri.001G327300 [exp] 684 / 0 AT3G27020 1088 / 0.0 YELLOW STRIPE like 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03169 [flax] [poplar] OPT OPT oligopeptide transporter protein
Representative CDS sequence Show only first row Show all	>Lus10023240 pacid=23181012 polypeptide=Lus10023240 locus=Lus10023240.g ID=Lus10023240.BGIv1.0 annot-version=v1.0 ATGATGAGTAATCGGGAGGGAATCGTGAAGGAGATTAATGATTCAGACTCGGAGGACGAAGTTGTTGCTGCAATGGAGGAGCAAGAGGAGGAGGAAGTGA AGAGGGTTGAACCATGGACTCAACAGATCACAGTGAGAGGGATTGTGGCGAGTATTGTGATTGGGATAATCTACAGTGTGATTGTGATGAAGCTGAATCT CACAACTGGGATAATCCCAACCCTAAATGTCTCAGCAGCACTGCTTGGATTTGTGTTTGTGAAAGCATGGACTAAGCTTCTTAAGAGAGCTGGGTTGGTA ACCAAGCCCTTTTCTAGACAGGAGAATACTTTGATTCAGACTTGTGCCGTAGCTTGTTACAGCATTTCTCTAGCAGGTGGTTTTGGGTCGTACCTGTTGG GATTGAACAAGAGGACTTATGAACAAGCTGGTGGATCTGAGACGAATGGTGTGTCAAATGGGAATAATCCAGGGAGTGTTAAGGAGCCTGGGATTGGATG GATGACTTGTTTCCAATTGGTGAGCTGCTTTGTTGGACTACTTGCTCTGGTTCCTCTCAGGAAGATCATGATAATAGACTACAAGCTGACGTATCCGAGT GGAACTGCTACTGCAGTTCTTATCAATGGCTTTCACACCAAGAAGGGAAACAAAATGGCCAAGAAGCAAGTCCGAGGGTTCGCGAAATGCTTTTCGTTCA GTTTCGTTTGGGCTTTCTTTCAGTGGTTCTACACCGGTGGAGATAAATGTGGGTTCCTTCAGTTCCCCACGTTCGGATTGGTCGCGAAGGAGCATTCATT TAACTTCGATTTCAGCTTGACTTACGTTGGAGCAGGTATGATTTGCTCCCATCTGGTGAATTTTTCTTTGCTCCTTGGTGCTGTGCTTTCTTATGGTATA ATGTGGCCATTGATTGCTCGTCGAGGAGATTGGTTTCCTCCGAACCTGCCACAATCCAGTATGAAGGGTCCATACGGTTACAAGGTGTTCATTTCTATTG CTATGATCCTCGGAGACGGTCTGTACAATTTCGTAAAGATACTTTATCTCACAGCTATCAGCATGCTCGAAAGCGCAAGGGGGAGGAAAAACGTCAGAAC ACGTCCGGAAAGCGAGAGTCCACCTGCTTCCAACGACGGTAGAAGAAACGAAGTATTCGTAAGGGAGACCATCCCCATCTGGATAGCCTGCCTCGGCTAC CTCGCCTTCTCCGTGATATCCATCATCGTGATCCCTCTCATGTTCCCGCAACTCAAATGGTACTACGTAGTGGTCGCGTACCTCCTCGCCCCCTCCCTAA GCTTCTGCAACGCCTACGGTACCGGTCTAACAGACATGAACATGGCCTACAACTACGGCAAAGTGGCCCTCTTCATCCTCGCAGCCATCTCCGGAAAACA AGACGGTGTAGTCGCAGGACTCGTAGGTTGCGGCCTGATCAAGTCAATCGTCTCAATGTCATCTGACTTAATGCAAGACATGAAAACCGGACACCTCACC CTAACATCCCCCCGATCGATGCTCGTCTGCCAAGCCATCGGAGTAGCAATTGGCTGCGTAGTAGCCCCCTTGAACTTCTTCGTGTTCTACAAAGCCTTCG AGCTCGGAGACCCCAACAGTGAGTACAAGGCTCCCTACGCATTAGTGTACCGAAACATGGCAATCCTAGGAGTGGAAGGATTCTCCGCTCTCCCTAAACA TTGCCTGCAGCTTTCGTACGGGTTCTTCTCGTTTGCAGTGGCGACGAACTTGGTGAGGGACGTGGTTCCTGAGAAGGTGAGCAGGTTTATTCCATTGCCG ATGGCAATGGCGGTTCCCTTCTTGATCGGAGGGAACTCGGCGGTGGATATGTGTGTTGGGAGTCTTGTTGTGTTTGTGTGGCAGAGGTTGGATTGTAGGA AGGCTAGGTTGATGGTTCCTGCTGTGGCGTCTGGGTTGATATGTGGAGATGGGTTGTGGATTCTGCCTTCTTCGCTGTTGGCTTTGGCCAAAGTTCGGCC TCCTATGTGTATGAGTTTCTCTAAAGGTAGCTAA
AA sequence Show only first row Show all	>Lus10023240 pacid=23181012 polypeptide=Lus10023240 locus=Lus10023240.g ID=Lus10023240.BGIv1.0 annot-version=v1.0 MMSNREGIVKEINDSDSEDEVVAAMEEQEEEEVKRVEPWTQQITVRGIVASIVIGIIYSVIVMKLNLTTGIIPTLNVSAALLGFVFVKAWTKLLKRAGLV TKPFSRQENTLIQTCAVACYSISLAGGFGSYLLGLNKRTYEQAGGSETNGVSNGNNPGSVKEPGIGWMTCFQLVSCFVGLLALVPLRKIMIIDYKLTYPS GTATAVLINGFHTKKGNKMAKKQVRGFAKCFSFSFVWAFFQWFYTGGDKCGFLQFPTFGLVAKEHSFNFDFSLTYVGAGMICSHLVNFSLLLGAVLSYGI MWPLIARRGDWFPPNLPQSSMKGPYGYKVFISIAMILGDGLYNFVKILYLTAISMLESARGRKNVRTRPESESPPASNDGRRNEVFVRETIPIWIACLGY LAFSVISIIVIPLMFPQLKWYYVVVAYLLAPSLSFCNAYGTGLTDMNMAYNYGKVALFILAAISGKQDGVVAGLVGCGLIKSIVSMSSDLMQDMKTGHLT LTSPRSMLVCQAIGVAIGCVVAPLNFFVFYKAFELGDPNSEYKAPYALVYRNMAILGVEGFSALPKHCLQLSYGFFSFAVATNLVRDVVPEKVSRFIPLP MAMAVPFLIGGNSAVDMCVGSLVVFVWQRLDCRKARLMVPAVASGLICGDGLWILPSSLLALAKVRPPMCMSFSKGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Lus10023240 [exp]	0	1
AT2G03050		SOLDAT10, EMB93	SINGLET OXYGEN-LINKED DEATH AC...		Lus10030451 [exp]	2.4	0.8682
AT5G02380		MT2B	metallothionein 2B (.1)		Lus10025350 [exp]	6.0	0.8134
AT3G50700	C2H2ZnF	ATIDD2	indeterminate(ID)-domain 2 (.1...		Lus10010820 [exp]	7.1	0.7912
AT5G04810			pentatricopeptide (PPR) repeat...		Lus10028851 [exp]	9.5	0.8250
AT5G51690		ACS12	1-amino-cyclopropane-1-carboxy...		Lus10038899 [exp]	10.8	0.8332
AT2G36350			Protein kinase superfamily pro...		Lus10035591 [exp]	11.3	0.8504
AT5G56590			O-Glycosyl hydrolases family 1...		Lus10034987 [exp]	18.1	0.8168
AT3G27180			S-adenosyl-L-methionine-depend...		Lus10012527 [exp]	21.4	0.8260
AT3G53940			Mitochondrial substrate carrie...		Lus10021497 [exp]	24.7	0.8217
AT3G55140			Pectin lyase-like superfamily ...		Lus10003307 [exp]	32.6	0.7567

Compare expression of checked genes

Lus10023240 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.