Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53550 84 / 1e-19 ATYSL3, YSL3 YELLOW STRIPE like 3 (.1.2) AT4G24120 81 / 3e-18 ATYSL1, YSL1 YELLOW STRIPE like 1 (.1) AT5G24380 79 / 1e-17 ATYSL2, YSL2 YELLOW STRIPE like 2 (.1) AT5G41000 72 / 2e-15 YSL4 YELLOW STRIPE like 4 (.1) AT3G27020 71 / 7e-15 YSL6 YELLOW STRIPE like 6 (.1) AT1G65730 70 / 2e-14 YSL7 YELLOW STRIPE like 7 (.1) AT1G48370 59 / 1e-10 YSL8 YELLOW STRIPE like 8 (.1) AT3G17650 59 / 1e-10 YSL5, PDE321 pigment defective 321, YELLOW STRIPE like 5 (.1) AT5G45450 45 / 3e-06 Oligopeptide transporter OPT superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023240 [exp] 107 / 1e-27 AT5G53550 994 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10008869 [exp] 107 / 2e-27 AT5G53550 994 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10008836 [exp] 87 / 2e-20 AT5G53550 1000 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10022360 [exp] 86 / 4e-20 AT5G53550 1044 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10022358 [exp] 85 / 2e-19 AT5G53550 939 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10032950 [exp] 84 / 3e-19 AT5G53550 912 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10033231 [exp] 84 / 3e-19 AT4G24120 1011 / 0.0 YELLOW STRIPE like 1 (.1) Lus10000879 [exp] 81 / 2e-18 AT4G24120 1006 / 0.0 YELLOW STRIPE like 1 (.1) Lus10013323 [exp] 71 / 1e-14 AT1G65730 1127 / 0.0 YELLOW STRIPE like 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G024700 [exp] 88 / 7e-21 AT5G53550 858 / 0.0 YELLOW STRIPE like 3 (.1.2) Potri.011G055224 [exp] 88 / 7e-21 AT5G53550 1008 / 0.0 YELLOW STRIPE like 3 (.1.2) Potri.001G084400 [exp] 84 / 3e-19 AT4G24120 932 / 0.0 YELLOW STRIPE like 1 (.1) Potri.001G082400 [exp] 76 / 2e-16 AT4G24120 813 / 0.0 YELLOW STRIPE like 1 (.1) Potri.001G327300 [exp] 73 / 1e-15 AT3G27020 1088 / 0.0 YELLOW STRIPE like 6 (.1) Potri.012G018805 [exp] 66 / 2e-14 AT5G53550 169 / 2e-50 YELLOW STRIPE like 3 (.1.2) Potri.004G069300 [exp] 69 / 5e-14 AT3G17650 897 / 0.0 pigment defective 321, YELLOW STRIPE like 5 (.1) Potri.017G151232 [exp] 67 / 6e-14 AT3G17650 343 / 3e-115 pigment defective 321, YELLOW STRIPE like 5 (.1) Potri.012G027800 [exp] 66 / 7e-14 AT5G53550 172 / 1e-50 YELLOW STRIPE like 3 (.1.2) Potri.017G151800 [exp] 66 / 5e-13 AT1G65730 935 / 0.0 YELLOW STRIPE like 7 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023241 pacid=23180930 polypeptide=Lus10023241 locus=Lus10023241.g ID=Lus10023241.BGIv1.0 annot-version=v1.0 ATGAGTGATCGGGAAGGAATCGTGAAGGAGATTAATGATGCAGACTCGGAGGACGAAGTTGTTGTTGCTGCAATGGAGAAACAGGAGGAGGAAGTGAAGG GAGATGAACCATGGACTCAGCAGACTACGGTGAGAGGGATTGTGGCGAGTATTATGATTGGGATAATCTACAGTGTGATTGTGATGAAGCTCAGCCTCAC AACTGGACGTATCAACAAGCTAGAGGTGGGACAATTTCAAACGGGAGCAACCCAAGGAGGGGCCATACGCTGCGTGGTAGAGCCGGTCAACTTCTTTGTA TTCGACGAGACATTCGAAGCCGGGGACCCATACAACGAGTACACGGCTCCTTACGCGGCAGTGTACAGAAACATGGCAATCCGAGGAGTGGAAGGATTCT CTGCCGTTCCTCGCCACTGCCTGCAGAATCCTTCTCCTAGAATTGCCATGTTTCGGTACACTGCAGCGTAA
AA sequence Show only first row Show all	>Lus10023241 pacid=23180930 polypeptide=Lus10023241 locus=Lus10023241.g ID=Lus10023241.BGIv1.0 annot-version=v1.0 MSDREGIVKEINDADSEDEVVVAAMEKQEEEVKGDEPWTQQTTVRGIVASIMIGIIYSVIVMKLSLTTGRINKLEVGQFQTGATQGGAIRCVVEPVNFFV FDETFEAGDPYNEYTAPYAAVYRNMAIRGVEGFSAVPRHCLQNPSPRIAMFRYTAA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24120		ATYSL1, YSL1	YELLOW STRIPE like 1 (.1)		Lus10023241 [exp]	0	1
AT3G28970		AAR3	antiauxin-resistant 3, Domain ...		Lus10005235 [exp]	2.8	0.9171
AT5G61540			N-terminal nucleophile aminohy...		Lus10009560 [exp]	3.9	0.9112
AT2G37480			unknown protein		Lus10025314 [exp]	5.3	0.9110
AT1G24120		ARL1	ARG1-like 1 (.1)		Lus10030827 [exp]	6.7	0.9096
AT1G28410			unknown protein		Lus10013982 [exp]	8.4	0.9075
					Lus10001241 [exp]	10.5	0.9046
AT3G12250	bZIP	BZIP45, TGA6	TGACG motif-binding factor 6 (...		Lus10024140 [exp]	13.9	0.9138
AT5G03430			phosphoadenosine phosphosulfat...		Lus10013826 [exp]	15.3	0.8904
AT5G52210		ATGB1, ATARLB1	GTP-binding protein 1 (.1.2)		Lus10027446 [exp]	16.4	0.9077
AT3G44680		HDA09, HDA9	histone deacetylase 9 (.1)		Lus10020570 [exp]	19.1	0.8946

Compare expression of checked genes

Lus10023241 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.