Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53530 538 / 0 VPS26A vacuolar protein sorting 26A (.1) AT4G27690 536 / 0 VPS26B vacuolar protein sorting 26B (.1.2) AT1G48550 52 / 4e-07 Vacuolar protein sorting-associated protein 26 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008868 [exp] 563 / 0 AT5G53530 503 / 0.0 vacuolar protein sorting 26A (.1) Lus10037421 [exp] 501 / 4e-178 AT5G53530 508 / 0.0 vacuolar protein sorting 26A (.1) Lus10041291 [exp] 283 / 1e-91 AT5G53530 432 / 3e-153 vacuolar protein sorting 26A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G081300 [exp] 554 / 0 AT4G27690 566 / 0.0 vacuolar protein sorting 26B (.1.2) Potri.018G150900 [exp] 548 / 0 AT4G27690 542 / 0.0 vacuolar protein sorting 26B (.1.2) Potri.009G021200 [exp] 517 / 0 AT5G53530 519 / 0.0 vacuolar protein sorting 26A (.1) Potri.001G222500 [exp] 516 / 0 AT5G53530 523 / 0.0 vacuolar protein sorting 26A (.1) Potri.015G037600 [exp] 50 / 2e-06 AT1G48550 481 / 5e-172 Vacuolar protein sorting-associated protein 26 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0135 [flax] [poplar] Arrestin_N-like PF03643 [flax] [poplar] Vps26 Vacuolar protein sorting-associated protein 26
Representative CDS sequence Show only first row Show all	>Lus10023242 pacid=23181029 polypeptide=Lus10023242 locus=Lus10023242.g ID=Lus10023242.BGIv1.0 annot-version=v1.0 ATGAAGAAGTTGAGCGGCGCTACCACTCAGCCTATGGCCACACCTTTAGCCTGGCCGCCGAGCATTTACGTGGTCCCGAAGAAGTTGATGGGCGTAGAAA GTATATACACTTCAGATCATATTCATGGTGACCAAGATGGTAGTACAAACCCAAGTATCGGGGCACGCTGGTCATTTCGGGCATGCGGGCAGTTGGCAGG ACTCTGGGCTCCTTCTCCATTCTTTTCCTCGTCTCCATTGATCAGACAAAACAAACTTCGATCGATCGGAAAACCAATTCTGTGTGCTCATTTCTTCAGT GTTGGGCTATCTCCCCCACTGCCGCGTAGCTTCTTTCCAGCTCCAGAGATCTCAATTCCTCCAGCTCCCGACCTCCCCAGTCTCAGTCTTTTACCCCCTC CCAAACACTTCTTCCAAGGTGTTTCTAGACTAGGGATTTTGGACAGGGTTTTGTACTGCACTAACACCATGAATTACCTTATTGGAGCTTTCAAGCCGGT ATGCAATACAACAATCTCGTTGAATGATGCCAAGATGCGGAAACAGGTTCCTGTAAAGAAGGAGAATGGCCAAACTGTTATGGTTCCACTGTTTCAGAGC CAAGAAAGTGTCGCAGGAAAGGTTGTGATTGAACCACCTCTAGGGAAGAAGATCGAACACAATGGTATTAAGGTTGAGCTTCTTGGTCAGATAGAGATGT ACTTTGACAGAGGAAGTTTTTATGACTTTACTTCGCTTGTACGTGAACTGGAGGTCCCTGGAGAAATATCTGAAATAAAAAATTATCCATTTGAATTTTC CACCGTCGAAATGCCCTACGAGACATACAATGGGGTGAATGTAAGGCTTAGGTATGTTCTCAGAGTGACTATTAGCCGCGGATATGCAGGGAGTATAATT GAATACCAGGACTTTGTGGTATGGAACTATTCTCCATCTCCGACTGTAAACAATAGTATCAAGATGGAAGTCGGAATTGAGGATTGTCTGCATATTGAGT TTGAGTACAATAAAAGCAAGTATCATCTGAAAGATGTGATTATTGGGAAAATCTATTTTCTCCTCGTGAGAATCAAAATAAAAAATATGGACCTCGAGAT CAGGCGCAGGGAGTCAACTGGATCAGGTTCCAATACCCATGTCGAGACCGAAACCCTCGCTAAATTTGAACTGATGGACGGAGCTCCTGTCAGAGGTGAG TCAATTCCAGTGAGACTGTTTCTAAGCCCTTATGATCTGACACCGACGCACCGGAATATCAACAACAAGTTCAGTGTGAAGTACTATTTGAACCTGGTCC TGGTGGATGAAGAGGACCGCCGCTATTTCAAGCAGCAGGAGATTACGATATACAGGATGCAGGAAGGTTCCTGA
AA sequence Show only first row Show all	>Lus10023242 pacid=23181029 polypeptide=Lus10023242 locus=Lus10023242.g ID=Lus10023242.BGIv1.0 annot-version=v1.0 MKKLSGATTQPMATPLAWPPSIYVVPKKLMGVESIYTSDHIHGDQDGSTNPSIGARWSFRACGQLAGLWAPSPFFSSSPLIRQNKLRSIGKPILCAHFFS VGLSPPLPRSFFPAPEISIPPAPDLPSLSLLPPPKHFFQGVSRLGILDRVLYCTNTMNYLIGAFKPVCNTTISLNDAKMRKQVPVKKENGQTVMVPLFQS QESVAGKVVIEPPLGKKIEHNGIKVELLGQIEMYFDRGSFYDFTSLVRELEVPGEISEIKNYPFEFSTVEMPYETYNGVNVRLRYVLRVTISRGYAGSII EYQDFVVWNYSPSPTVNNSIKMEVGIEDCLHIEFEYNKSKYHLKDVIIGKIYFLLVRIKIKNMDLEIRRRESTGSGSNTHVETETLAKFELMDGAPVRGE SIPVRLFLSPYDLTPTHRNINNKFSVKYYLNLVLVDEEDRRYFKQQEITIYRMQEGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53530		VPS26A	vacuolar protein sorting 26A (...		Lus10023242 [exp]	0	1
AT3G09740		ATSYP71, SYP71	syntaxin of plants 71 (.1)		Lus10015075 [exp]	3.7	0.9039
AT5G25265			unknown protein		Lus10005347 [exp]	4.2	0.9053
AT5G25265			unknown protein		Lus10041028 [exp]	4.5	0.9012
AT5G26751		ATSK11 ,SK 11	ARABIDOPSIS THALIANA SHAGGY-RE...		Lus10001519 [exp]	4.9	0.9150
AT2G43320			S-adenosyl-L-methionine-depend...		Lus10015953 [exp]	5.0	0.9261
AT4G30340		ATDGK7	diacylglycerol kinase 7 (.1)		Lus10019987 [exp]	5.5	0.8986
AT4G33740			unknown protein		Lus10020507 [exp]	7.3	0.9229
AT1G24050			RNA-processing, Lsm domain (.1...		Lus10010705 [exp]	7.7	0.9004
AT2G43790		ATMAPK6, MAPK6,...	MAP kinase 6 (.1)		Lus10027091 [exp]	8.7	0.9072
AT1G26665			Mediator complex, subunit Med1...		Lus10024211 [exp]	9.0	0.9019

Compare expression of checked genes

Lus10023242 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.