Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27700 268 / 3e-91 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) AT5G66040 49 / 1e-07 STR16 sulfurtransferase protein 16 (.1.2) AT3G08920 49 / 8e-07 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) AT2G21045 47 / 1e-06 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) AT5G66170 46 / 3e-06 STR18 sulfurtransferase 18 (.1.2.3) AT2G17850 45 / 6e-06 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) AT4G35770 45 / 7e-06 ATSEN1, DIN1, SEN1 SENESCENCE ASSOCIATED GENE 1, DARK INDUCIBLE 1, ARABIDOPSIS THALIANA SENESCENCE 1, Rhodanese/Cell cycle control phosphatase superfamily protein (.1.2.3) AT2G42220 46 / 8e-06 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) AT4G24750 42 / 0.0001 Rhodanese/Cell cycle control phosphatase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008866 [exp] 344 / 2e-121 AT4G27700 249 / 4e-84 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Lus10012566 [exp] 58 / 2e-10 AT5G66040 129 / 1e-39 sulfurtransferase protein 16 (.1.2) Lus10041525 [exp] 59 / 7e-10 AT5G14030 216 / 8e-70 translocon-associated protein beta (TRAPB) family protein (.1), translocon-associated protein beta (TRAPB) family protein (.2), translocon-associated protein beta (TRAPB) family protein (.3), translocon-associated protein beta (TRAPB) family protein (.4) Lus10028390 [exp] 54 / 9e-09 AT4G35770 182 / 3e-59 SENESCENCE ASSOCIATED GENE 1, DARK INDUCIBLE 1, ARABIDOPSIS THALIANA SENESCENCE 1, Rhodanese/Cell cycle control phosphatase superfamily protein (.1.2.3) Lus10005635 [exp] 54 / 1e-08 AT5G66040 144 / 1e-44 sulfurtransferase protein 16 (.1.2) Lus10004811 [exp] 54 / 1e-08 AT3G08920 239 / 3e-80 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Lus10041894 [exp] 53 / 1e-08 AT5G66170 120 / 1e-35 sulfurtransferase 18 (.1.2.3) Lus10002485 [exp] 53 / 2e-08 AT3G08920 239 / 3e-80 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Lus10041843 [exp] 50 / 2e-07 AT4G35770 182 / 6e-59 SENESCENCE ASSOCIATED GENE 1, DARK INDUCIBLE 1, ARABIDOPSIS THALIANA SENESCENCE 1, Rhodanese/Cell cycle control phosphatase superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G020700 [exp] 301 / 2e-104 AT4G27700 262 / 4e-89 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.015G008000 [exp] 301 / 4e-104 AT4G27700 268 / 2e-91 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.006G100600 [exp] 62 / 1e-11 AT3G08920 238 / 6e-80 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.014G131300 [exp] 52 / 1e-08 AT2G21045 204 / 2e-68 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.002G014900 [exp] 52 / 2e-08 AT4G35770 151 / 8e-47 SENESCENCE ASSOCIATED GENE 1, DARK INDUCIBLE 1, ARABIDOPSIS THALIANA SENESCENCE 1, Rhodanese/Cell cycle control phosphatase superfamily protein (.1.2.3) Potri.005G106400 [exp] 53 / 3e-08 AT4G35770 199 / 1e-64 SENESCENCE ASSOCIATED GENE 1, DARK INDUCIBLE 1, ARABIDOPSIS THALIANA SENESCENCE 1, Rhodanese/Cell cycle control phosphatase superfamily protein (.1.2.3) Potri.015G086100 [exp] 44 / 4e-05 AT4G24750 416 / 1e-147 Rhodanese/Cell cycle control phosphatase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [flax] [poplar] Phosphatase PF00581 [flax] [poplar] Rhodanese Rhodanese-like domain
Representative CDS sequence Show only first row Show all	>Lus10023243 pacid=23181072 polypeptide=Lus10023243 locus=Lus10023243.g ID=Lus10023243.BGIv1.0 annot-version=v1.0 ATGGCGGCTGCCGTACTTCCTTCAATCCCCTCTCCATCTTCTTCTTCTTCTTCTTCTTCAACTAGTTTTTCTCATTCCAAGCCATCTGCTCCATCATCCT TCTTCACCGTCAGACCGTACGGCAGAATCAAAGGAAACCTCTCAAACTCTCGCCACTCTGTTCCAAAGATCCTATGTGCAGCAACAAAGACTGCAAAGTC TCCAGCTGAAGAAGAATGGAAGGTCAAGAGAGAATTGCTTTTGCAGAAAAAAGTCAGGAGTGTAGAAGTTAAGGAAGCTCTTCGCCTTCAGAAGGAGAAC AACTTTGTCATCCTTGATGTCAGACCTGAAGCTGAGTTCAAAGAGGCTCATCCACCGGATGCAATCAATGTCCAAATATACAGACTTATAAAGGAGTGGA CGGCCTGGGACATAGCCAGGCGTGCTGCATTCGCATTTTTCGGCATCTTTGCTGGCACCGAAGAGAACCCTGAGTTTATACAGACTATGGAATCCAAACT TAGTAAAGATTCGAAGATTATCGTGGCTTGCTCAGCAGGAGGCACGATGAAACCGTCGCAAAATCTTCCTGAAGGTCAGCAATCCAGATCATTGATAGCA GCGTACCTGTTAGTCCTCAATGGTTATAAGAACGTCTTCCATTTAGAAGGCGGTCTGTATACGTGGTTCAAGGAGGGGTTGCCGGCGGTTGGTGAAGAAG AGTGA
AA sequence Show only first row Show all	>Lus10023243 pacid=23181072 polypeptide=Lus10023243 locus=Lus10023243.g ID=Lus10023243.BGIv1.0 annot-version=v1.0 MAAAVLPSIPSPSSSSSSSSTSFSHSKPSAPSSFFTVRPYGRIKGNLSNSRHSVPKILCAATKTAKSPAEEEWKVKRELLLQKKVRSVEVKEALRLQKEN NFVILDVRPEAEFKEAHPPDAINVQIYRLIKEWTAWDIARRAAFAFFGIFAGTEENPEFIQTMESKLSKDSKIIVACSAGGTMKPSQNLPEGQQSRSLIA AYLLVLNGYKNVFHLEGGLYTWFKEGLPAVGEEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27700			Rhodanese/Cell cycle control p...		Lus10023243 [exp]	0	1
AT5G45930		CHLI-2, CHLI2	magnesium chelatase i2 (.1)		Lus10015302 [exp]	1.0	0.9595
AT4G27700			Rhodanese/Cell cycle control p...		Lus10008866 [exp]	1.4	0.9581
AT1G64355			unknown protein		Lus10003895 [exp]	3.2	0.9430
AT1G23360		MENG	S-adenosyl-L-methionine-depend...		Lus10033614 [exp]	3.9	0.9491
AT3G46780		PTAC16	plastid transcriptionally acti...		Lus10040768 [exp]	4.6	0.9539
AT2G30570		PSBW	photosystem II reaction center...		Lus10033862 [exp]	7.9	0.9478
AT1G55670		PSAG	photosystem I subunit G (.1)		Lus10017476 [exp]	9.2	0.9480
AT4G05180		PSII-Q, PSBQ, P...	photosystem II subunit Q-2 (.1...		Lus10007627 [exp]	10.4	0.9507
AT1G73060		LPA3	Low PSII Accumulation 3 (.1)		Lus10002315 [exp]	10.7	0.9378
AT3G59780			Rhodanese/Cell cycle control p...		Lus10027050 [exp]	10.7	0.9346

Compare expression of checked genes

Lus10023243 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.