Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24318 561 / 0 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G16230 397 / 1e-134 O-Glycosyl hydrolases family 17 protein (.1) AT3G55430 375 / 4e-127 O-Glycosyl hydrolases family 17 protein (.1) AT4G34480 373 / 3e-125 O-Glycosyl hydrolases family 17 protein (.1) AT3G46570 333 / 1e-111 Glycosyl hydrolase superfamily protein (.1) AT5G55180 332 / 7e-110 O-Glycosyl hydrolases family 17 protein (.1.2) AT4G26830 330 / 2e-109 O-Glycosyl hydrolases family 17 protein (.1) AT2G05790 327 / 1e-107 O-Glycosyl hydrolases family 17 protein (.1) AT2G01630 322 / 1e-105 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G39640 322 / 6e-105 glycosyl hydrolase family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008865 [exp] 793 / 0 AT5G24318 517 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10040294 [exp] 444 / 6e-154 AT3G55430 483 / 2e-169 O-Glycosyl hydrolases family 17 protein (.1) Lus10004962 [exp] 426 / 2e-146 AT5G24318 462 / 8e-161 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10040808 [exp] 424 / 3e-145 AT5G24318 484 / 2e-168 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10016539 [exp] 424 / 5e-145 AT5G24318 484 / 1e-168 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10040461 [exp] 374 / 3e-126 AT2G16230 649 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10023576 [exp] 369 / 3e-124 AT2G16230 644 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10012080 [exp] 368 / 1e-123 AT2G16230 564 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10005166 [exp] 347 / 1e-114 AT5G24318 385 / 1e-129 O-Glycosyl hydrolases family 17 protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G017800 [exp] 602 / 0 AT5G24318 583 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.015G010100 [exp] 483 / 2e-170 AT5G24318 466 / 1e-163 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.001G240000 [exp] 476 / 4e-166 AT5G24318 508 / 2e-178 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.008G056000 [exp] 438 / 2e-151 AT3G55430 494 / 1e-173 O-Glycosyl hydrolases family 17 protein (.1) Potri.008G055900 [exp] 431 / 4e-149 AT3G55430 494 / 8e-174 O-Glycosyl hydrolases family 17 protein (.1) Potri.002G261800 [exp] 403 / 1e-137 AT2G16230 635 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.004G153800 [exp] 396 / 5e-135 AT4G34480 649 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.009G115400 [exp] 386 / 3e-131 AT4G34480 645 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.002G224600 [exp] 349 / 2e-116 AT2G05790 750 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.010G203800 [exp] 346 / 4e-115 AT3G55430 354 / 2e-118 O-Glycosyl hydrolases family 17 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [flax] [poplar] PF07983 [flax] [poplar] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Lus10023245 pacid=23181077 polypeptide=Lus10023245 locus=Lus10023245.g ID=Lus10023245.BGIv1.0 annot-version=v1.0 ATGGCCACCAATCCTCAAACATTCCTCACTTGTCTCTTCATTCTAATTCCACTCATCTCCGACGCTGAAGCCAGCATCGGAGTAAACTACGGCACCGCAG CAGACGACCTCCCTCCGCCGTCCGACGTGGCACGCTTCCTCCTCCAATCCACCCTCATCAACCGGGTCAGGATCTTCGAACCCGACCCGGAACTAATCCG AGCTTTCGCCCATACTGGAATCCGACTCACCCTCACCATCCCAAACCACCAAATTCCTAACCTCACAAACTTCACATTCGCTCAACAATGGCTTGATTCC TTTGTGGTCCCTTTCCTACCACCGACCAACATCGTCCGGATCCTCGTTGGCAACGAAGTCCTCTCCACGGCCAATAAACTCCTAATCGATAGCCTCGTTC CAGCGATGCAGACTCTCCATGCCGCCTTGGTCCGATCATTGCTGGACCGTCGGATTCAGATCTCCACTCCTCACTCGCTCGGAATCCTCTCCGATTCTAC CCCTCCTTCTGCCGGGAAATTCCACCGAGGATATGACGTTCATATCCTCAAGCCATTGCTTACTTTTCTCAGAGATACAAATTCCTCTTTCATGATCAAT CCTTATCCCTTCTTCGGATGCTGCTCTGATATCGCAAGTCTGGACTACGCTCTGTTTCGACCTAATCCAGGGGTTCTCGACGAGAACACGAAGCTTCGAT ACACCAACATGTTGGACGCCCAGCTCGACGCGGTGTTCTCCGCCTTGAAATCGCTAGGGTTCACCGATCTGGAGATCGTGATTGCCGAGACAGGGTGGCC GTCCAGTGGCGATCCATCGCAGATAGGCGTCGGGACTGAGAAAGCGGCCCTGTTCAATCGGAATCTGATACAGCATGTGAATTCAGGAGTAGGGACGCCT TTGATGCCAAATCGGAGCTTCGAGACATACATATTCGCTCTATTCAACGAGGATCAGAAACCAGGGCCTGCCTGTGAGAGGAGCTTCGGCCTGTTCAATC CTGACTTGTCGCCGGTGTACGACATAGGGATCCTCCGCCCAATGGTTTCGCGGCGATCGTCGGAGAATTCTCCGGCAAAGTGGTGTATGGCAAAAGAAGG GGCGGATGAGGGAGCCTTGCAGCGGAATATTGACTACGTGTGTGGGACCTCGGCTTCCATGGGGTCGTACTGGTGCGCACCGATACAAGAAGGCAGAGAG TGCTTTTTGCCAAATACAGTTAGGGCACACGCATCGTTCGCCATGAATGCATTCTATCAAGCAATGGGGAGGAACGACTATGATTGCGAGTTCCGGCAGA CTGGGGAAATCACCACAGTCGATCCACGTCTTTGTAAACCATAA
AA sequence Show only first row Show all	>Lus10023245 pacid=23181077 polypeptide=Lus10023245 locus=Lus10023245.g ID=Lus10023245.BGIv1.0 annot-version=v1.0 MATNPQTFLTCLFILIPLISDAEASIGVNYGTAADDLPPPSDVARFLLQSTLINRVRIFEPDPELIRAFAHTGIRLTLTIPNHQIPNLTNFTFAQQWLDS FVVPFLPPTNIVRILVGNEVLSTANKLLIDSLVPAMQTLHAALVRSLLDRRIQISTPHSLGILSDSTPPSAGKFHRGYDVHILKPLLTFLRDTNSSFMIN PYPFFGCCSDIASLDYALFRPNPGVLDENTKLRYTNMLDAQLDAVFSALKSLGFTDLEIVIAETGWPSSGDPSQIGVGTEKAALFNRNLIQHVNSGVGTP LMPNRSFETYIFALFNEDQKPGPACERSFGLFNPDLSPVYDIGILRPMVSRRSSENSPAKWCMAKEGADEGALQRNIDYVCGTSASMGSYWCAPIQEGRE CFLPNTVRAHASFAMNAFYQAMGRNDYDCEFRQTGEITTVDPRLCKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10023245 [exp]	0	1
AT5G42930			alpha/beta-Hydrolases superfam...		Lus10005092 [exp]	21.2	0.7512
AT4G05220			Late embryogenesis abundant (L...		Lus10006755 [exp]	21.7	0.7680
AT5G19260		FAF3	FANTASTIC FOUR 3, Protein of u...		Lus10010520 [exp]	24.6	0.7322
AT2G32190			unknown protein		Lus10031782 [exp]	29.6	0.7159
AT5G05830			RING/FYVE/PHD zinc finger supe...		Lus10027744 [exp]	35.1	0.7176
AT5G05830			RING/FYVE/PHD zinc finger supe...		Lus10035549 [exp]	35.5	0.6981
AT5G35740			Carbohydrate-binding X8 domain...		Lus10038801 [exp]	46.9	0.7302
AT5G14890			NHL domain-containing protein ...		Lus10014529 [exp]	47.7	0.7206
AT4G27590			Heavy metal transport/detoxifi...		Lus10032924 [exp]	55.0	0.6910
AT1G68430			unknown protein		Lus10034103 [exp]	56.7	0.7207

Compare expression of checked genes

Lus10023245 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.