Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53480 509 / 2e-172 ARM repeat superfamily protein (.1) AT3G08947 339 / 5e-107 ARM repeat superfamily protein (.1) AT3G08943 336 / 1e-105 ARM repeat superfamily protein (.1) AT5G19820 55 / 2e-07 EMB2734 embryo defective 2734, ARM repeat superfamily protein (.1) AT1G26170 42 / 0.0009 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008864 [exp] 591 / 0 AT5G53480 1443 / 0.0 ARM repeat superfamily protein (.1) Lus10008863 [exp] 590 / 0 AT5G53480 1443 / 0.0 ARM repeat superfamily protein (.1) Lus10023246 [exp] 587 / 0 AT5G53480 1449 / 0.0 ARM repeat superfamily protein (.1) Lus10034318 [exp] 472 / 5e-158 AT5G53480 1332 / 0.0 ARM repeat superfamily protein (.1) Lus10041453 [exp] 469 / 5e-157 AT5G53480 1334 / 0.0 ARM repeat superfamily protein (.1) Lus10031905 [exp] 116 / 7e-31 AT5G53480 106 / 7e-28 ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G017500 [exp] 529 / 3e-180 AT5G53480 1531 / 0.0 ARM repeat superfamily protein (.1) Potri.015G010400 [exp] 529 / 4e-180 AT5G53480 1547 / 0.0 ARM repeat superfamily protein (.1) Potri.016G123600 [exp] 361 / 2e-115 AT3G08943 1288 / 0.0 ARM repeat superfamily protein (.1) Potri.006G103300 [exp] 357 / 1e-113 AT3G08943 1294 / 0.0 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF03810 [flax] [poplar] IBN_N Importin-beta N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10023247 pacid=23181071 polypeptide=Lus10023247 locus=Lus10023247.g ID=Lus10023247.BGIv1.0 annot-version=v1.0 ATGGCTATGGAGGTGACACAGGTTCTCCTGAATGCACAATCGATAGATCGCAATGTTCAGAAGCAAGCTGAGGAGAGCTTGAATCAGTTCCAAGAGCAGA ACCTCCCTGCTTTCTTGTTTTCTCTATCAGGTGAGCTTGCCAATGAGGATAAACCTGCTGATAGCCGCAGATTAGCTGGTTTGATGTTGAAAAATGCGCT GGATGCTAAAGAGCAGCACAGGAAGTTTGAGCTTGTTCAGAGATGGTTGATGTTGGATGCTACTGTGAAGGCTCAGATAAAATCATGCTTGTTGAAGACA CTCTCGTCTCTTGTACCTGATGCTCGTAAACCTGCAGCTCAAGTAATCGCTAAAGTTGCTGGAATTGAGCTCCCGCAGAAACAGTGGCCTGAATTGATTG GATCCCTTTTGTCGAATGTTCATCAGCTACCTGCTCATGTCAAAGAAGCAACGTTGGAGACTCTTGGGTATTTGTGCGAGGAAGTTTCTCCGGATGCTGT TGATCAGGATAACGTGAATAAAATCTTGACTGTGGTAGTTCAAGGAATGAGTTCTTCTGAAGTAAACACTGATGTGAGACTGGCTGCTATTCAAGCATTA TATAATGCTCTGAGCTTTGCTCAAGCGAATTTCAGCAATGACATGGAACGTGATTATATCATGAGAGTTGTCTGTGAGGCTGCTTTGTCGAAAGAATTGA AGATCCGCCTGGCAGCTTTTGAGTGTTTGGTCCTTGTTCAGAAGCTAAGCTCGTCGGAGCCAACTAAGTATCTTTTTATGCAGTATGCAGACCAGATAAT GGGTCTGTTCCTTAGGGTGTTTGCTTCTAAAAGCGCAACTGTGCATGAGGAAGCCGTGCTTGCTATTGGAGCCCTTGCCTATGCATGTGGCCCAAAATTT GACAAGTACATGCCAGAACTTTACAAGTACTTGGAGATCGGCCTTCAAAATTTTGAAGAATACCAGGTGTGTGCTGTTACTGTTGGAGTGGTAGGCGATA TTTGCAGGGCGTTGGAAAATAAAGTTCTACCTTATTGTGACGGGATCATGACACAGCTTCTGAAGGATTTGTCAAGCAATCAGTTGCATCGATCCGTTAA GCCGCCTATATTCTCCTGTCTTGGCGACGTTGCACTGGCAATAGGCCAAGACTTTGAAAAATATCTGATGTACGCCATGCCAATGCTCCAAAGTGCTGCC GAATTGTCTGCTCATACTACAGGTGCTGATGATGACATGGTCGAATATACGAATTCTCTCAGAAACGGAATCTTGGAGGCTTATTCTGGAATATTTCAAG GGTTTAAGAACTCAACTAAAACCCAGCTGTTGATCCCTTATGCACCACACATTCTCCAGTTCTTGGATAGCATATACATGGAGAAAGACATGGATGATTT GGTGATGAAAACAGCTATTGGCGTACTTGGAGACTTGGCAGACACACTTGGAAGCAATGCCGGAACTATGATACAGAATTCTCTCTCTAGCAGAGACTTT TTGAATGAATGCTTATCTTCAGAAGACGGCTCGATAAAGGAATCTGCTGAATGGACGAAGCTGGCGATCACTCGTGCCATATCTGCTTGA
AA sequence Show only first row Show all	>Lus10023247 pacid=23181071 polypeptide=Lus10023247 locus=Lus10023247.g ID=Lus10023247.BGIv1.0 annot-version=v1.0 MAMEVTQVLLNAQSIDRNVQKQAEESLNQFQEQNLPAFLFSLSGELANEDKPADSRRLAGLMLKNALDAKEQHRKFELVQRWLMLDATVKAQIKSCLLKT LSSLVPDARKPAAQVIAKVAGIELPQKQWPELIGSLLSNVHQLPAHVKEATLETLGYLCEEVSPDAVDQDNVNKILTVVVQGMSSSEVNTDVRLAAIQAL YNALSFAQANFSNDMERDYIMRVVCEAALSKELKIRLAAFECLVLVQKLSSSEPTKYLFMQYADQIMGLFLRVFASKSATVHEEAVLAIGALAYACGPKF DKYMPELYKYLEIGLQNFEEYQVCAVTVGVVGDICRALENKVLPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCLGDVALAIGQDFEKYLMYAMPMLQSAA ELSAHTTGADDDMVEYTNSLRNGILEAYSGIFQGFKNSTKTQLLIPYAPHILQFLDSIYMEKDMDDLVMKTAIGVLGDLADTLGSNAGTMIQNSLSSRDF LNECLSSEDGSIKESAEWTKLAITRAISA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53480			ARM repeat superfamily protein...		Lus10023247 [exp]	0	1
AT5G53480			ARM repeat superfamily protein...		Lus10023246 [exp]	1.0	0.9443
AT2G05170		ATVPS11	vacuolar protein sorting 11 (....		Lus10012332 [exp]	3.5	0.9098
AT2G30110		ATUBA1, MOS5	MODIFIER OF SNC1 5, ubiquitin-...		Lus10022666 [exp]	6.0	0.9227
AT1G48760		PAT4, DELTA-ADR	PROTEIN-AFFECTED TRAFFICKING 4...		Lus10036002 [exp]	6.9	0.9066
AT1G07670		ATECA4	endomembrane-type CA-ATPase 4 ...		Lus10042843 [exp]	9.5	0.9171
AT5G57870		eIFiso4G1	eukaryotic translation Initiat...		Lus10036594 [exp]	10.0	0.8644
AT2G25800			Protein of unknown function (D...		Lus10013392 [exp]	10.6	0.9224
AT5G65950			unknown protein		Lus10041289 [exp]	11.0	0.8940
AT3G13300		VCS	VARICOSE, Transducin/WD40 repe...		Lus10038742 [exp]	11.7	0.9144
AT2G46520			cellular apoptosis susceptibil...		Lus10005969 [exp]	12.1	0.9229

Compare expression of checked genes

Lus10023247 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.