Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50790 227 / 4e-74 SWEET10, AtSWEET10 Nodulin MtN3 family protein (.1) AT2G39060 221 / 3e-72 SWEET9, AtSWEET9 Nodulin MtN3 family protein (.1) AT3G48740 219 / 4e-71 SWEET11, AtSWEET11 Nodulin MtN3 family protein (.1) AT5G23660 217 / 3e-70 MTN3, SWEET12, AtSWEET12 homolog of Medicago truncatula MTN3 (.1) AT5G13170 214 / 7e-69 SAG29, SWEET15, AtSWEET15 senescence-associated gene 29 (.1) AT5G50800 204 / 8e-65 SWEET13, AtSWEET13 Nodulin MtN3 family protein (.1) AT4G25010 203 / 1e-64 SWEET14, AtSWEET14 Nodulin MtN3 family protein (.1) AT1G21460 152 / 2e-45 SWEET1, AtSWEET1 Nodulin MtN3 family protein (.1) AT4G15920 149 / 2e-44 SWEET17, AtSWEET17 Nodulin MtN3 family protein (.1) AT3G16690 144 / 3e-42 SWEET16, AtSWEET16 Nodulin MtN3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008861 [exp] 465 / 3e-168 AT5G50790 246 / 1e-81 Nodulin MtN3 family protein (.1) Lus10024770 [exp] 237 / 5e-78 AT5G23660 259 / 4e-86 homolog of Medicago truncatula MTN3 (.1) Lus10009782 [exp] 237 / 8e-78 AT5G23660 261 / 8e-87 homolog of Medicago truncatula MTN3 (.1) Lus10040901 [exp] 223 / 5e-72 AT5G13170 236 / 8e-77 senescence-associated gene 29 (.1) Lus10005935 [exp] 221 / 2e-71 AT5G50800 235 / 3e-76 Nodulin MtN3 family protein (.1) Lus10016742 [exp] 221 / 2e-71 AT5G50790 291 / 2e-98 Nodulin MtN3 family protein (.1) Lus10003143 [exp] 217 / 6e-70 AT5G13170 295 / 4e-100 senescence-associated gene 29 (.1) Lus10032553 [exp] 214 / 8e-69 AT5G50790 279 / 9e-94 Nodulin MtN3 family protein (.1) Lus10022436 [exp] 213 / 2e-68 AT5G50790 285 / 5e-96 Nodulin MtN3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G030500 [exp] 243 / 2e-80 AT2G39060 272 / 3e-92 Nodulin MtN3 family protein (.1) Potri.015G101700 [exp] 227 / 3e-74 AT5G23660 312 / 3e-107 homolog of Medicago truncatula MTN3 (.1) Potri.015G101400 [exp] 220 / 2e-71 AT5G50790 276 / 7e-93 Nodulin MtN3 family protein (.1) Potri.015G101500 [exp] 219 / 3e-71 AT5G50790 291 / 6e-99 Nodulin MtN3 family protein (.1) Potri.015G101600 [exp] 214 / 7e-69 AT5G50790 276 / 1e-92 Nodulin MtN3 family protein (.1) Potri.012G103200 [exp] 212 / 3e-68 AT5G50790 230 / 1e-74 Nodulin MtN3 family protein (.1) Potri.003G166800 [exp] 207 / 2e-66 AT5G13170 290 / 3e-98 senescence-associated gene 29 (.1) Potri.001G060900 [exp] 204 / 4e-65 AT5G13170 294 / 9e-100 senescence-associated gene 29 (.1) Potri.005G187300 [exp] 157 / 2e-47 AT1G21460 365 / 6e-129 Nodulin MtN3 family protein (.1) Potri.013G013800 [exp] 158 / 4e-47 AT4G15920 214 / 3e-69 Nodulin MtN3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0141 [flax] [poplar] MtN3-like PF03083 [flax] [poplar] MtN3_slv Sugar efflux transporter for intercellular exchange
Representative CDS sequence Show only first row Show all	>Lus10023249 pacid=23181096 polypeptide=Lus10023249 locus=Lus10023249.g ID=Lus10023249.BGIv1.0 annot-version=v1.0 ATGGTTGCAGCAAAGTTCCTCATCATCAATCATGAAAAGCTTGCTCTCATTTTCGGTCTACTCGGAAACATAATCTCTTTCTTGGTGTTCTTAGCTCCCC TGCCGACGTTTTACAAAATCTATAAGAAGAAGTCGTCACAAGGATTCCACTCGATACCATACGTGACGGCACTGATGAGTGCAATGTTGTTGCTGTACTA TGGACTTCTGAAGACGAATGCGACGCTCATAATTACGATCAATGCCATTGGGTGCGCCATTGAGCTCATTTACCTCTCCGTCTACCTTTTCTACTCACCA GCCAGAGAATTGATGTTTACAGTGAAGATGCTGGTTAGTTCATTGGGAGGATATGGTGGCATGATGCTGGTAACTGTGTTTTGGCTTCATGGTAGCTTAA GGTTGAACACCATTGGATGGATATGTGCTGTGTTCAACATTGCAGTCTTTGCTGCTCCCTTGAGCATTGTGAGAAACGTGATAAAGACGAAGAGCGTGGA GTACATGCCCTTCTCCCTGTCGTTCTTCCTTACGCTCTGCGCCACTGCGTGGTTCTTCTATGGCCTTCTCGTCAACGATTACTACATTGCGCTGCCAAAT GTGCTAGGGTTTCTATTTGGGATAACACAGATGGTGCTGTACATGATCTACAAGGATGCTGCAAAGGCAGTTGCAGATGGTGAAATCTCAAAGCAAGAGG AAGCAAACAACGCTGCACTTTACATTGAAATGGGAGGAGTTAATAATAAGCATAATAACTAG
AA sequence Show only first row Show all	>Lus10023249 pacid=23181096 polypeptide=Lus10023249 locus=Lus10023249.g ID=Lus10023249.BGIv1.0 annot-version=v1.0 MVAAKFLIINHEKLALIFGLLGNIISFLVFLAPLPTFYKIYKKKSSQGFHSIPYVTALMSAMLLLYYGLLKTNATLIITINAIGCAIELIYLSVYLFYSP ARELMFTVKMLVSSLGGYGGMMLVTVFWLHGSLRLNTIGWICAVFNIAVFAAPLSIVRNVIKTKSVEYMPFSLSFFLTLCATAWFFYGLLVNDYYIALPN VLGFLFGITQMVLYMIYKDAAKAVADGEISKQEEANNAALYIEMGGVNNKHNN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50790		SWEET10, AtSWEE...	Nodulin MtN3 family protein (....		Lus10023249 [exp]	0	1
					Lus10000351 [exp]	2.6	1.0000
					Lus10002886 [exp]	3.7	1.0000
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10021543 [exp]	4.6	1.0000
					Lus10014748 [exp]	5.3	1.0000
AT3G26880			Plant self-incompatibility pro...		Lus10022631 [exp]	5.9	1.0000
AT3G25050		XTH3	xyloglucan endotransglucosylas...		Lus10022782 [exp]	6.5	1.0000
AT5G58660			2-oxoglutarate (2OG) and Fe(II...		Lus10031865 [exp]	6.6	1.0000
					Lus10023108 [exp]	7.0	1.0000
					Lus10024321 [exp]	8.0	1.0000
AT2G02850		ARPN	plantacyanin (.1)		Lus10028396 [exp]	8.5	1.0000

Compare expression of checked genes

Lus10023249 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.