Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41150 538 / 0 unknown protein AT3G56750 529 / 0 unknown protein AT4G12700 84 / 2e-17 unknown protein AT2G04280 82 / 1e-16 unknown protein AT4G08810 78 / 3e-15 SUB1 calcium ion binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008860 [exp] 768 / 0 AT2G41150 545 / 0.0 unknown protein Lus10022403 [exp] 645 / 0 AT2G41150 560 / 0.0 unknown protein Lus10018111 [exp] 636 / 0 AT2G41150 555 / 0.0 unknown protein Lus10041091 [exp] 92 / 5e-20 AT2G04280 745 / 0.0 unknown protein Lus10036415 [exp] 91 / 2e-19 AT2G04280 828 / 0.0 unknown protein Lus10039176 [exp] 72 / 3e-13 AT4G08810 845 / 0.0 calcium ion binding (.1) Lus10013761 [exp] 71 / 5e-13 AT4G08810 836 / 0.0 calcium ion binding (.1) Lus10039175 [exp] 56 / 1e-08 AT4G08810 463 / 5e-163 calcium ion binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G035600 [exp] 591 / 0 AT3G56750 549 / 0.0 unknown protein Potri.006G040400 [exp] 585 / 0 AT3G56750 567 / 0.0 unknown protein Potri.014G170200 [exp] 86 / 5e-18 AT2G04280 862 / 0.0 unknown protein Potri.001G005500 [exp] 76 / 1e-14 AT4G08810 762 / 0.0 calcium ion binding (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023250 pacid=23180910 polypeptide=Lus10023250 locus=Lus10023250.g ID=Lus10023250.BGIv1.0 annot-version=v1.0 ATGGCGACAATTCACAAACCATTGAAGCTGAAGAAGCCCAGACTGAGATCGCCAATCCCCAACCTGCTCATATGGTTAGTAGCCGCCGCCATTGGGCTTA TCTTCCTTTTCTCGGCGAGTGATTTCTCCATCGACGACTCTATGAAACTCATACAGCGGATGATGAGGTCCAAGCGGCCCAGGCGGGTGCACACTCTGCA TGACAAGTATTTGTACTGGGGGAGTAGGATCGATTGTCCTGGAAAGCATTGCGAATCTTGTGAAGGTTTGGGTCACCAGGAGTCTAGCCTCAGGTGTGCT CTTGAGGAGGCATTGTTTCTTAACAGAACTTTTGTCATGCCATCTAGAATGTGCATCAATCCTATACATAATATGAAGGGAATTCTCCATCGTTCTGCTA ATTCAACTTCTGAAGAAAGGTGGACATCAAGCTCTTGCAGTGTGGAGTCCTTGTACGATATAGACTTCATGTCTGAAACCGTACCGGTTATCTTGGACAA TTCAATAGAGTGGTTTTACCTTGTTACGATTGCAATGAGATTGGGATCGAGAGGAATCGCCAATGTACAAGGTGTTAGTCGGGTTGAACTCAAAGAAGGC AGCCAGTACACCAATCTGTTGCTCATAAATCGAACTGCTAGTCCTCTTTCATGGTTTATGGAATGCAAGGGAAGAAGCAACCGCAGTGATATTATGCTGC CATACTCATTTCTTCCTTCAGTAGCGTCAGAGAGATTGCGGGATGCTGCAGACTTGATCATAGCTAAACTCGGCGATTATGATGCTATTCATGTTCGCCG CGGAGACAAAATCAAAACAAGGAACGACCGATTTGGTGTTCCTCGCAGCCTCCACCCTCATCTGGACAGGGATACACGCCCAGAATACATTCTTCAGAGA ATCGGAAAATGGGTCCCACCTGGAAGAACTGTTTTTATTGCTTCAAATGAGAGGACGCCAGGTTTCTTTTCCCCTCTTTCTGTCAGATACAGATTAGCAT ATTCTTCAAACTACAGCAGGATCCTGGACCCTTTGATTCAGAACAACTATGAACTGTTCATGATCGAAAGGCTGATAATGATGGGTGCGAAAACATTCAT TAGAACGTTCAAGGAAGATGATACAGATTTAAGCCTCACTGATGACCCAAAGAAGAACACCAAGATATGGCAACTCCCCGTTTATACCATGGCCGAAGTT CGAGATAAATGA
AA sequence Show only first row Show all	>Lus10023250 pacid=23180910 polypeptide=Lus10023250 locus=Lus10023250.g ID=Lus10023250.BGIv1.0 annot-version=v1.0 MATIHKPLKLKKPRLRSPIPNLLIWLVAAAIGLIFLFSASDFSIDDSMKLIQRMMRSKRPRRVHTLHDKYLYWGSRIDCPGKHCESCEGLGHQESSLRCA LEEALFLNRTFVMPSRMCINPIHNMKGILHRSANSTSEERWTSSSCSVESLYDIDFMSETVPVILDNSIEWFYLVTIAMRLGSRGIANVQGVSRVELKEG SQYTNLLLINRTASPLSWFMECKGRSNRSDIMLPYSFLPSVASERLRDAADLIIAKLGDYDAIHVRRGDKIKTRNDRFGVPRSLHPHLDRDTRPEYILQR IGKWVPPGRTVFIASNERTPGFFSPLSVRYRLAYSSNYSRILDPLIQNNYELFMIERLIMMGAKTFIRTFKEDDTDLSLTDDPKKNTKIWQLPVYTMAEV RDK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41150			unknown protein		Lus10023250 [exp]	0	1
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Lus10001416 [exp]	3.2	0.8746
AT2G41150			unknown protein		Lus10008860 [exp]	4.1	0.8374
AT4G14210		PDE226, PDS3	PIGMENT DEFECTIVE 226, phytoen...		Lus10021967 [exp]	4.2	0.8607
AT5G64380			Inositol monophosphatase famil...		Lus10020433 [exp]	8.8	0.8795
AT2G38330			MATE efflux family protein (.1...		Lus10012227 [exp]	16.2	0.8641
AT4G14210		PDE226, PDS3	PIGMENT DEFECTIVE 226, phytoen...		Lus10041260 [exp]	17.1	0.8209
AT3G44670			Disease resistance protein (TI...		Lus10028343 [exp]	17.3	0.8242
AT5G48220			Aldolase-type TIM barrel famil...		Lus10001179 [exp]	19.9	0.8271
AT5G07020			proline-rich family protein (....		Lus10005388 [exp]	20.8	0.8642
AT3G15354		SPA3	SPA1-related 3 (.1)		Lus10019476 [exp]	21.3	0.8624

Compare expression of checked genes

Lus10023250 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.