Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50270 512 / 2e-176 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22410 356 / 1e-114 SLO1 SLOW GROWTH 1 (.1) AT4G14820 354 / 1e-113 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G29760 352 / 2e-112 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 350 / 3e-112 MEF22 mitochondrial editing factor 22 (.1) AT1G08070 347 / 1e-110 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G04780 341 / 2e-109 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G15930 329 / 2e-104 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G05240 325 / 4e-104 MEF19 mitochondrial editing factor 19 (.1) AT3G24000 326 / 3e-103 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029436 [exp] 373 / 5e-121 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004052 [exp] 353 / 3e-114 AT1G31430 684 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10002288 [exp] 350 / 3e-113 AT1G31430 689 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10010320 [exp] 345 / 2e-111 AT2G34400 658 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10040680 [exp] 347 / 1e-110 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010901 [exp] 334 / 4e-109 AT3G15930 360 / 2e-118 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030053 [exp] 341 / 2e-108 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 340 / 1e-107 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039117 [exp] 337 / 1e-107 AT3G24000 740 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G103600 [exp] 384 / 7e-126 AT1G08070 477 / 7e-160 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031600 [exp] 384 / 7e-125 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G019500 [exp] 380 / 4e-124 AT2G22410 791 / 0.0 SLOW GROWTH 1 (.1) Potri.006G105700 [exp] 380 / 7e-124 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G128900 [exp] 373 / 3e-121 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G011000 [exp] 366 / 2e-117 AT1G08070 572 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G012600 [exp] 361 / 7e-117 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G135600 [exp] 358 / 1e-116 AT4G38010 672 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.003G088600 [exp] 357 / 5e-115 AT1G31430 690 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.010G086200 [exp] 358 / 7e-115 AT4G14820 840 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10023251 pacid=23181009 polypeptide=Lus10023251 locus=Lus10023251.g ID=Lus10023251.BGIv1.0 annot-version=v1.0 ATGCCGCCGTTCAGCAGCAACAAGATTACAGCTTTGCTGCGCAATTCCTGTAGTGTTCCTCAATTCGAGCATCTTCATGGTTTCCTCCTCACTTCCAGCC GATTCCAGCATAAGTCTTCTTTTGCGTCTTCCCTCTCTCTCTGCCGCCGTCTCCACTTCTCCGTCCACCCACCCCCCACCACCACGAAACGATGGAACAT CGTTATCAGAGGCGTATCGGAAAGTCACGGACCTTCAGCAGCTCTTGTTCAATACCGGAAGATGCGGCGCAGCAGTTTCCATCCCGACGAGCACACGTTT CCCCTGCTTCTCAAGTTGCTCTCCAAGTTGAAAGACCGAGACCCGATGGTTTGCTACCCTGAAATCATCAAGCATGGCCTTGATCTCGACTGCTTCGTTA GGAACTCTTTGATTTCTTCTCTGGCAAACTACGGGAACTTGAATTTTGCCCGCCAAGTGTTTGATGAAAGTCCGCAGAAGGAAATCGTGACTTGGACTGC GATGATTGATGGGTACGTGAAGAACGGGAGTCCCTTGGAAGGTATTCGATGTTTCCTGACAATGAGATCGATCGGTGTAAAGGTCGATGAATTTTCAGTC GCGAGCGCTCTCCTTGCAGCTGGAATGATGAATGATGTCTGGATTGGGAGATGGATTCATGGATTCTACGTAGAATCAGGCAGGGTCAAATGGGATGCTT TCGTCGGGAGTGCATTGGTTGACATGTACATGAAATGTGGGTACTTCAACGACGCCTGCCAAGTGTTCGATGAAATGCCAACGAGAAATGTGATCTCGTG GAGCGGCTTAGTCTCTGGGTTTGTGCATCTCAACAGATACAACGAAGCATTACAATCCTTTCAAGATATGCTAATCGGCAATGTCAAACCAAACCCTAAA ACTCTAACAAGCGTCGTCACGGCTTGTGCTCAGCTCGGCGCATTGGAACAAGGCAAATGGATCCACCGATACATCGAGCTCAACTCGATCGAGCTAAACT CGATCCTCGGGACATCGTTGATCGATATGTACATGAAATGCGGCTGCATCAACGAGGCACGTTTCATCTTCAATAAGCTCCCGAAAAAAGGTCTATACAC ATGGACTGCCATGATCAATGGTTTTGCCATGAACGGTGATCCATCCGCCTCGTTGAGATTCTTCTCTCGAATGATGAGCTCCGGAATCCAGCCGAACAAA GTCACATTCCTCGCTGTCCTCGGTGCATGTTCTCATAACGGATTAGTAAACGAAGGTCGTAAATTGTTCGAGATGATGAAGGAGGAATTCGATCTCGAAC CTGACGTTGAGCATTACGGTTGCATGGTTGACTTGCTAGGCCGAGCGGGGTACTTGGGCGAGGCGATGGAGGTTATCAAGGGGATGCCAATGGAGCCGAG TTTCAGAGTGTGGGGGGCTCTGCTTGGTGCGTGTGTGATTCATAAGGATTTCGAGCTAGGCGAATGGATTGGGAACCGTTTGGTGAAGCTCGAACCGGAC CATGGCGGTGGTGGTGGTGGCTATAGCTCGCTGCTGGCGAATGTGTACTCAGCAAGGGGGAAGTGGGATGATGCAGCTAGTGTGAGGAAGGTGATGAAAG GGAAGAGGATTGGAGTTAGCTGGATCGATGTGAATGGGGAGATTTGTGAGTTTGTTGCCTTCGATATGTCTCATCCATGTTGGGAAGAGTTGTGTCGAAT TCTCAAGACTTTCATTCGAATTTGGGATTGA
AA sequence Show only first row Show all	>Lus10023251 pacid=23181009 polypeptide=Lus10023251 locus=Lus10023251.g ID=Lus10023251.BGIv1.0 annot-version=v1.0 MPPFSSNKITALLRNSCSVPQFEHLHGFLLTSSRFQHKSSFASSLSLCRRLHFSVHPPPTTTKRWNIVIRGVSESHGPSAALVQYRKMRRSSFHPDEHTF PLLLKLLSKLKDRDPMVCYPEIIKHGLDLDCFVRNSLISSLANYGNLNFARQVFDESPQKEIVTWTAMIDGYVKNGSPLEGIRCFLTMRSIGVKVDEFSV ASALLAAGMMNDVWIGRWIHGFYVESGRVKWDAFVGSALVDMYMKCGYFNDACQVFDEMPTRNVISWSGLVSGFVHLNRYNEALQSFQDMLIGNVKPNPK TLTSVVTACAQLGALEQGKWIHRYIELNSIELNSILGTSLIDMYMKCGCINEARFIFNKLPKKGLYTWTAMINGFAMNGDPSASLRFFSRMMSSGIQPNK VTFLAVLGACSHNGLVNEGRKLFEMMKEEFDLEPDVEHYGCMVDLLGRAGYLGEAMEVIKGMPMEPSFRVWGALLGACVIHKDFELGEWIGNRLVKLEPD HGGGGGGYSSLLANVYSARGKWDDAASVRKVMKGKRIGVSWIDVNGEICEFVAFDMSHPCWEELCRILKTFIRIWD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50270			Pentatricopeptide repeat (PPR)...		Lus10023251 [exp]	0	1
AT1G04480			Ribosomal protein L14p/L23e fa...		Lus10024943 [exp]	3.0	0.8247
AT1G43170		RPL3A, ARP1, EM...	embryo defective 2207, ribosom...		Lus10006181 [exp]	6.3	0.8163
AT5G59600			Tetratricopeptide repeat (TPR)...		Lus10016511 [exp]	7.2	0.8016
AT5G08510			Pentatricopeptide repeat (PPR)...		Lus10005987 [exp]	9.2	0.8008
AT3G03580			Tetratricopeptide repeat (TPR)...		Lus10007806 [exp]	9.9	0.7893
AT1G03510			Tetratricopeptide repeat (TPR)...		Lus10018543 [exp]	10.2	0.7321
AT3G13160			Tetratricopeptide repeat (TPR)...		Lus10018394 [exp]	12.6	0.8095
AT5G12100			pentatricopeptide (PPR) repeat...		Lus10023863 [exp]	14.5	0.7946
AT5G52470		ATFIB1, ATFBR1,...	SKP1/ASK1-INTERACTING PROTEIN,...		Lus10014969 [exp]	15.0	0.7915
AT1G13410			Tetratricopeptide repeat (TPR)...		Lus10021068 [exp]	18.0	0.7852

Compare expression of checked genes

Lus10023251 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.