Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51280 1002 / 0 DEAD-box protein abstrakt, putative (.1) AT4G33370 861 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT1G55150 310 / 6e-99 DEA(D/H)-box RNA helicase family protein (.1) AT2G42520 306 / 4e-96 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G58570 303 / 1e-94 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G47330 304 / 6e-94 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G58510 299 / 2e-93 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2), DEA(D/H)-box RNA helicase family protein (.3) AT5G63120 289 / 6e-90 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G33730 292 / 1e-89 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G01540 287 / 1e-88 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008856 [exp] 976 / 0 AT5G51280 851 / 0.0 DEAD-box protein abstrakt, putative (.1) Lus10012899 [exp] 340 / 7e-115 AT5G51280 318 / 1e-106 DEAD-box protein abstrakt, putative (.1) Lus10015976 [exp] 312 / 2e-98 AT2G42520 849 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10000849 [exp] 311 / 3e-98 AT2G42520 837 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015977 [exp] 308 / 4e-98 AT2G42520 738 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10016207 [exp] 309 / 3e-97 AT2G42520 850 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037646 [exp] 303 / 3e-96 AT1G55150 843 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10015627 [exp] 303 / 3e-96 AT1G55150 845 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10019484 [exp] 304 / 4e-95 AT5G63120 757 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G224000 [exp] 1042 / 0 AT5G51280 1072 / 0.0 DEAD-box protein abstrakt, putative (.1) Potri.005G047301 [exp] 613 / 0 AT5G51280 520 / 0.0 DEAD-box protein abstrakt, putative (.1) Potri.003G038300 [exp] 304 / 1e-96 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.003G217800 [exp] 305 / 1e-95 AT2G42520 812 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.015G083000 [exp] 303 / 6e-95 AT5G63120 707 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.001G007900 [exp] 302 / 1e-94 AT2G42520 807 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.019G130900 [exp] 300 / 1e-94 AT1G55150 321 / 2e-103 DEA(D/H)-box RNA helicase family protein (.1) Potri.002G194600 [exp] 306 / 3e-94 AT2G47330 1048 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G196000 [exp] 298 / 3e-93 AT3G58570 790 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.012G084600 [exp] 298 / 8e-93 AT5G63120 704 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10023252 pacid=23181104 polypeptide=Lus10023252 locus=Lus10023252.g ID=Lus10023252.BGIv1.0 annot-version=v1.0 ATGGAGGAGGAAGACGACTATGAGGAGTATGTGCCGGTTGCAAAGCGTCGGGCTCTAGAAGCACAGAAGATTCTTCAAAGGAAGGGAAATGCAGTAGCTT TTGAAGATGAACTCGAGAAGTCTAAGCAAGAGGAAGCAAAACCGAGTCTCCTGGTGAAAGCGACTCAGCTGAAGCGGGAACAACCTGTTGTCACCGAGAC GGAGCAGATCGTTCAACAGGAGAAGGAAATGATCGAGCACCTCAGTGATAGGAAGACCCTAATGTCCGTCCGAGAATTGGCGAAAGGAATCACTTATTCA GACCCTCTGTTGACGGGATGGAAGCCTCCGCTTAGAATCAGGAGGATGTCCACAAAGCAATGCGATGCTATTCGGAAGCAGTGGCATATTTTAGTAGAAG GAGATGAAATCCCTCCGCCGATCAAGAACTTCAGAGAGATGAGGTTTCCTGAACCGATTTTGAGCAACTTGAAGCTTAAGGGGATTGTTCAGCCGACTCC GATTCAAGTTCAGGGGCTTCCTGTTATCTTAGCTGGAAGAGATATGATCGGGATTGCATTTACGGGGTCTGGGAAAACTCTCGTTTTTGTTCTGCCGATG ATTATGATCGCTCTGCAGGAGGAATGCATGATGCCTTTACTGCCAGGGGAAGGACCCTTTGGGTTGGTTGTTTGTCCTTCGAGAGAACTGGCTAGGCAGA CTTTTGATGTGGTTGAGCAGTTTCTGACTCCAATGAGGGAGGCTGGATATCCTGAATTGAGAACTTTGCTCTGTATCGGTGGAGTTGAAATGAAATCGCA GTTGGAGATCGTGAAGAGAGGTGTGCATATTGTTGTTGCCACTCCAGGAAGGTTGAAGGATCTTCTTGCAAAGAAAAAAATGAGTCTCGACAGTTGCAGG TATCTAACGTTGGACGAGGCAGATAGACTAGTGGATCTAGGTTTTGAGGATGACATCAGGGTAGTATTTGACCACTTCAAAGCACAAAGGCAGACTCTTC TCTTCTCCGCAACCATGCCCACCAAAATCCAGAACTTCGCCAAAAGCGCTCTCGTAAAACCCGTGATAGTCAACGTGGGGCGAGCCGGTGCAGCAAATCT CGACGTCATTCAAGAGGTCGAGTACGTGAAACAAGAAGCCAAGCTCGTTTACCTCCTCGAATGCCTCCAGAAGACTCCTCCACCCGTCTTGGTCTTCTGC GAGAACAAAGTCGATGTCGATACAATCCAAGAGTATCTACTTCACAAAGGAGTCGAGGCCGCCTCGATCCATGGAGACAAAGACCAAGCCGACCGAGAGG AAGCTATCCAATTCTTCAAAGCCGGGAAAAAGGACGTCCTGGTTGCTACTGATGTTGCCTCAAAGGGTCTCGATTTCCCCGACATTCAACACGTGATCAA CTACGACATGCCGGCCGAGATCGAGAACTACGTCCACAGGATCGGACGAACCGGAAGGTGCGGCAAGACTGGGATCGCTACGACTTTTATAAACAAGACC CAGAGCGAGACTACGCTTCTCGATTTGAAGCACCTGTTGCAGGAGGCTAAGCAGAGGATCCCGCCCGTTCTGGCCGAGTTGGATGATCCGATGGAGTTTG GAGACGAGATTCAAGATGCAAGCGGAGTTAAAGGTTGCGCTTATTGTGGTGGTCTTGGTCATCGTATCGGTGATTGCCCTAAGCTTGAGCACCAGAGTAG CCAGCAGCTTGCGAACTCCAGGAGGGATTACTTCGGCTCCGGTGGATATAGGGGAGAAATGTAA
AA sequence Show only first row Show all	>Lus10023252 pacid=23181104 polypeptide=Lus10023252 locus=Lus10023252.g ID=Lus10023252.BGIv1.0 annot-version=v1.0 MEEEDDYEEYVPVAKRRALEAQKILQRKGNAVAFEDELEKSKQEEAKPSLLVKATQLKREQPVVTETEQIVQQEKEMIEHLSDRKTLMSVRELAKGITYS DPLLTGWKPPLRIRRMSTKQCDAIRKQWHILVEGDEIPPPIKNFREMRFPEPILSNLKLKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPM IMIALQEECMMPLLPGEGPFGLVVCPSRELARQTFDVVEQFLTPMREAGYPELRTLLCIGGVEMKSQLEIVKRGVHIVVATPGRLKDLLAKKKMSLDSCR YLTLDEADRLVDLGFEDDIRVVFDHFKAQRQTLLFSATMPTKIQNFAKSALVKPVIVNVGRAGAANLDVIQEVEYVKQEAKLVYLLECLQKTPPPVLVFC ENKVDVDTIQEYLLHKGVEAASIHGDKDQADREEAIQFFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKT QSETTLLDLKHLLQEAKQRIPPVLAELDDPMEFGDEIQDASGVKGCAYCGGLGHRIGDCPKLEHQSSQQLANSRRDYFGSGGYRGEM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51280			DEAD-box protein abstrakt, put...		Lus10023252 [exp]	0	1
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Lus10035215 [exp]	1.0	0.9157
AT3G26400		EIF4B1	eukaryotic translation initiat...		Lus10036874 [exp]	2.4	0.8765
AT2G35790			unknown protein		Lus10023498 [exp]	2.8	0.8610
AT4G26680			Tetratricopeptide repeat (TPR)...		Lus10009548 [exp]	2.8	0.8705
AT5G28740			Tetratricopeptide repeat (TPR)...		Lus10022346 [exp]	3.2	0.8847
AT2G31240			Tetratricopeptide repeat (TPR)...		Lus10003563 [exp]	5.5	0.8667
AT3G51650			unknown protein		Lus10009097 [exp]	6.5	0.8417
AT5G07900			Mitochondrial transcription te...		Lus10004957 [exp]	7.1	0.8475
AT5G47660	Trihelix		Homeodomain-like superfamily p...		Lus10038779 [exp]	9.2	0.8154
AT4G22670		ATHIP1, TPR11	tetratricopeptide repeat 11, H...		Lus10032227 [exp]	9.9	0.8625

Compare expression of checked genes

Lus10023252 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.