Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49250 342 / 3e-115 IDN1, DMS3 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1) AT5G24280 153 / 3e-40 GMI1 gamma-irradiation and mitomycin c induced 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008855 [exp] 607 / 0 AT3G49250 345 / 2e-116 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1) Lus10008854 [exp] 453 / 4e-160 AT3G49250 289 / 1e-95 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1) Lus10030244 [exp] 250 / 8e-80 AT3G49250 241 / 2e-76 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1) Lus10003997 [exp] 245 / 3e-78 AT3G49250 226 / 7e-71 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1) Lus10022400 [exp] 178 / 7e-49 AT5G24280 1270 / 0.0 gamma-irradiation and mitomycin c induced 1 (.1) Lus10018114 [exp] 47 / 1e-06 ND 47 / 3e-07
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G012600 [exp] 477 / 5e-168 AT3G49250 435 / 3e-151 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1) Potri.012G016000 [exp] 469 / 5e-165 AT3G49250 426 / 8e-148 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1) Potri.002G172000 [exp] 323 / 1e-108 AT3G49250 311 / 1e-103 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1) Potri.012G016100 [exp] 183 / 1e-50 AT5G24280 1107 / 0.0 gamma-irradiation and mitomycin c induced 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023253 pacid=23181032 polypeptide=Lus10023253 locus=Lus10023253.g ID=Lus10023253.BGIv1.0 annot-version=v1.0 ATGGAAGTGGATCAGAATGAAAGGGGTATAGTTCCCTGGGAGGCAACACAAAATGCAGGGTTTATGCAAGCCCAATCCGACCTCCTGAACTCTAAGAGAC TTCAAGATGATCTTCAGACCTTGGGGCTGAAAATCAAGCAACAGGAGAACAATATAAAGCTTCTGAAGACTCAGAAGAACAAACTAGATGATTCTATTTT GGATACGCAAGTCGTTCTTGGTAAGTACCATGCTTCTGCTGGAATGGGCATTGGCAATGAAGAACGCACTTCCAGCCAGAGTGAGGAGGAAACAATTAGA CAGATTCTCCGGCATGAATTTTCAGCTGCCGGCATTTTATGCCAACTGAGAGTAAATCAAACATCATCTGGCTCTTACATGACGTTGATGAAAGATGTAG TTGGAATTGTTGCCACACTTGGTCGAGTAGATGATGATAATCTTAGCAGGATGTTATCTCAGTTCCTAGGAACGAAAACTATGCTAGCAGTTGTATGCAA GTCTTATGAAGGTGTGAAAGCTCTGGAGCCATATGACAAAGAAGGACACACTATCAAGGACTCCGGTATCCATGGTCTGGCTGCTTCACTTGGGAAAGCT TTGGACGGTCCATTTTCCGTCATTTGTCTCGAAGATCTGAGGCATGAATCCATATTTCTCTTCTGTAGGCCTTATTGTGGTGAATTCGTTATGGATGACC CTCAAAGAAGGTTGGATCTTCTGAAGCCAAAATTTCCAAATGGAGAGAGTCCTCCTGGATTTCTTGGTTTTGCTGTAAATATGATAAACGTGGAATACAT CGACTTGTTTTATCTCACATCTGGTGGACATGGCATCAGGGAGACTCTGTTCTACAATATCTTCTCTCGCTTGCAAGTTTACAAAACAAGGAAAGAAATG TTACTTTCTCGTCCTTGTATATCTCATGGAGCCATTTCCTTGGATGGGGGCATGATTAGGCAAACAGGTATCTTTTCACTAGGCAGCGGGGAGGAGCCGA AGATAAGGTTCCCGAAACGTTCATTATCAAGCGTGTCAAGTAAGTACGCTGAAACTGAGAAACAACTATTGGAGATGCGATGGAAAAAGGAGAAAATGGA AGAGGATGTGAAGAGGGCACAAGCATTGTTAGATGCTGCAAGGAACCAATTTCAAAAGAAGAAGGAGAGTTCGTCAAGTTCCTTGCTGAAAGCTCAGCAT ATCAAGCTCAGGTAA
AA sequence Show only first row Show all	>Lus10023253 pacid=23181032 polypeptide=Lus10023253 locus=Lus10023253.g ID=Lus10023253.BGIv1.0 annot-version=v1.0 MEVDQNERGIVPWEATQNAGFMQAQSDLLNSKRLQDDLQTLGLKIKQQENNIKLLKTQKNKLDDSILDTQVVLGKYHASAGMGIGNEERTSSQSEEETIR QILRHEFSAAGILCQLRVNQTSSGSYMTLMKDVVGIVATLGRVDDDNLSRMLSQFLGTKTMLAVVCKSYEGVKALEPYDKEGHTIKDSGIHGLAASLGKA LDGPFSVICLEDLRHESIFLFCRPYCGEFVMDDPQRRLDLLKPKFPNGESPPGFLGFAVNMINVEYIDLFYLTSGGHGIRETLFYNIFSRLQVYKTRKEM LLSRPCISHGAISLDGGMIRQTGIFSLGSGEEPKIRFPKRSLSSVSSKYAETEKQLLEMRWKKEKMEEDVKRAQALLDAARNQFQKKKESSSSSLLKAQH IKLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49250		IDN1, DMS3	INVOLVED IN DE NOVO 1, defecti...		Lus10023253 [exp]	0	1
AT4G36640			Sec14p-like phosphatidylinosit...		Lus10023956 [exp]	6.9	0.7573
AT1G22060			unknown protein		Lus10020915 [exp]	8.6	0.8156
AT4G30993			Calcineurin-like metallo-phosp...		Lus10040035 [exp]	16.4	0.7501
AT5G26910			unknown protein		Lus10020689 [exp]	19.1	0.7608
AT3G23070		ATCFM3A	CRM family member 3A (.1)		Lus10022091 [exp]	21.4	0.8001
AT2G03060	MADS	AGL30	AGAMOUS-like 30 (.1.2)		Lus10030450 [exp]	22.7	0.7664
AT5G65930		PKCBP, ZWI	POTATO KINESIN-LIKE CALMODULIN...		Lus10006064 [exp]	29.8	0.7849
AT5G60740		ABCG28	ATP-binding cassette G28, ABC ...		Lus10041325 [exp]	29.8	0.7875
AT4G00560			NAD(P)-binding Rossmann-fold s...		Lus10040929 [exp]	31.3	0.6869
AT5G64860		DPE1	disproportionating enzyme (.1)		Lus10035845 [exp]	33.3	0.7561

Compare expression of checked genes

Lus10023253 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.