Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30460 543 / 0 C3HZnF CPSF30, ATCPSF30 ARABIDOPSIS THALIANA CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 30, cleavage and polyadenylation specificity factor 30 (.1.2) AT4G11970 136 / 5e-35 YTH family protein (.1.2.3) AT1G55500 71 / 9e-13 ECT4 evolutionarily conserved C-terminal region 4 (.1.2.3) AT1G27960 70 / 2e-12 ECT9 evolutionarily conserved C-terminal region 9 (.1) AT5G58190 67 / 2e-11 ECT10 evolutionarily conserved C-terminal region 10 (.1.2) AT1G09810 66 / 3e-11 ECT11 evolutionarily conserved C-terminal region 11 (.1) AT3G13460 67 / 4e-11 ECT2 evolutionarily conserved C-terminal region 2 (.1.2.3.4) AT1G79270 66 / 5e-11 ECT8 evolutionarily conserved C-terminal region 8 (.1) AT3G17330 66 / 6e-11 ECT6 evolutionarily conserved C-terminal region 6 (.1.2) AT3G13060 66 / 7e-11 ECT5 evolutionarily conserved C-terminal region 5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008853 [exp] 538 / 0 AT1G30460 563 / 0.0 ARABIDOPSIS THALIANA CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 30, cleavage and polyadenylation specificity factor 30 (.1.2) Lus10006706 [exp] 142 / 3e-37 AT4G11970 335 / 1e-114 YTH family protein (.1.2.3) Lus10007048 [exp] 141 / 8e-37 AT4G11970 335 / 1e-113 YTH family protein (.1.2.3) Lus10034792 [exp] 75 / 1e-13 AT3G13060 646 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Lus10033335 [exp] 75 / 1e-13 AT3G13060 653 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Lus10027582 [exp] 74 / 2e-13 AT5G58190 417 / 6e-140 evolutionarily conserved C-terminal region 10 (.1.2) Lus10037365 [exp] 73 / 3e-13 AT1G09810 323 / 7e-105 evolutionarily conserved C-terminal region 11 (.1) Lus10037028 [exp] 72 / 6e-13 AT3G13060 415 / 6e-138 evolutionarily conserved C-terminal region 5 (.1.2) Lus10015778 [exp] 71 / 6e-13 AT3G13060 360 / 5e-120 evolutionarily conserved C-terminal region 5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G089901 [exp] 590 / 0 AT1G30460 613 / 0.0 ARABIDOPSIS THALIANA CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 30, cleavage and polyadenylation specificity factor 30 (.1.2) Potri.001G357800 [exp] 572 / 0 AT1G30460 602 / 0.0 ARABIDOPSIS THALIANA CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 30, cleavage and polyadenylation specificity factor 30 (.1.2) Potri.001G113500 [exp] 140 / 5e-36 AT4G11970 398 / 5e-138 YTH family protein (.1.2.3) Potri.003G222700 [exp] 72 / 6e-13 AT3G13460 520 / 4e-178 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Potri.014G001000 [exp] 71 / 2e-12 AT3G13060 756 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Potri.001G002000 [exp] 70 / 2e-12 AT3G13460 546 / 0.0 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Potri.007G002800 [exp] 70 / 3e-12 AT3G13060 732 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Potri.001G056100 [exp] 69 / 5e-12 AT3G13060 431 / 5e-144 evolutionarily conserved C-terminal region 5 (.1.2) Potri.010G175500 [exp] 65 / 1e-10 AT1G79270 418 / 2e-140 evolutionarily conserved C-terminal region 8 (.1) Potri.008G080800 [exp] 64 / 2e-10 AT1G79270 424 / 2e-142 evolutionarily conserved C-terminal region 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0178 [flax] [poplar] PUA PF04146 [flax] [poplar] YTH YT521-B-like domain
Representative CDS sequence Show only first row Show all	>Lus10023254 pacid=23180955 polypeptide=Lus10023254 locus=Lus10023254.g ID=Lus10023254.BGIv1.0 annot-version=v1.0 ATGGAGGACACGGAGGGAGTCCTCAGCTTCGACTTTGAAGGCGGCCTCGACTCCGGCCCCGCCCACCCTACAGCCTCCATGCCAGCTATCCCTGCCGACA ACTCAGCCTCGGCTTCCGCCGCAGCTGTCACTAATCTCTCCACCCCCGCCGCCCCGGCCACTGACCCCTCCTCTAACTATCAACCAGGGCGGCGGAGTTT CCGGCAGACTGTCTGCCGCCACTGGCTTCGTAGCCTCTGTATGAAGGGCGACGCGTGTGGCTTCCTCCATCAGTACGATAAGGCTCGTATGCCTGTTTGC CGGTTCTTTAGGCTTTATGGGGAGTGCCGGGAGCAAGATTGCGTGTACAAGCACACCAATGAGGATATCAAGGAATGCAACATGTACAAGTTGGGATTTT GCCCAAATGGACCAGATTGTCGATATAGGCATGCAAAGCTCCCAGGACCTCCGCCCTCGGTAGAAGAAGTTCTCCAGAAGATTCAGCAATTGCCTTCATA CTACGGCCAAAACAAGTTTTTCCAACAACGAGGTGGCTATCATCAACAAGGTGATAGACCACAGTTTCCCCAGGGCCCCAACCATATCAACCAAGCTGGA AATGTGCGACCTTCAGCTGCAGAATCTGCTAACATGCAACCGAACGAACAGCCGCCACAACAACAACCACCACAGCAGCAACAGCTTTTACCACAGCAAC AGGTCGGCCAGACACAGCTACAGAATGCCCCCAATGGTGTGCCTAATCAGCCCAACAGAACATCGACTCCCTTGCCTCAAGGAATATCTAGGTATTTTAT AGTCAAAAGTTGCAACCGTGAAAATTTGGAACTCTCTGTGCAACAAGGTGTATGGGCAACCCAAAGAAGCAATGAAGCTAAATTGAATGAAGCTTTTGAT TCTGCAGAGAATGTCATCTTGGTTTTCTCTGTCAATCGAACTCGTCATTTTCAGGGCTGTGCAAAGATGACTTCAAAGATTGGTGCTACTATTGGAGGAG GGAATTGGAAATATCAACATGGCACTGCACATTATGGACGGAACTTCTCTGTCAAGTGGTTGAAGTTATGTGAGCTATCATTCCACAAAACTAGACATTT GAGGAATCCGTATAATGAGAACTTACCAGTGAAGATTAGCAGAGATTGTCAGGAGTTGGAGCCATCCGTTGGAGAGCAGCTGGCTTCCTTGCTTTACCTT GAGCCGGATAGTGAACTGATGGCGATTGCAGTTGCAGCTGAAGCTAAGCGAGAAGAAGAGAAGGCAAAGGGACTGAATACCGAGAACGAAAACCCTGACA TTGTCCTATTTGACGACAACGAAGAAGAAGAGGAAGAAGAAAGTGAAGAAGAGGAAGAGAGCTTCGGGCAACCACCAGGGCCACCAATGACAATGCAAGG AAGGGGGAGAGGGAGAGGACTCATGTGGCCTCCTCAAATGCCACCAATGGGCCGCGGAATGAGGCCCATGCCCGGATTACGAGGATTCCCTCCGATGATG ATAGGTGGAGACGGATTTCCGTTTGGACCACCTGATGGTTTTGGGATGCCAGATCCTTTCGCACCTCGAGGATTCAACCCCTACGGTCCCAGGTTTAATG GTGAGTTCCCGGGTCCTGGAGCCGGTATGATGTTCCCTGGCAGACCCCCTCAGTTTCCACCCGGTGGCTTCGGGATGAACATGGGTCCATCACGGGGCCC CTTCATGGGAGGGATGGGACCCGGTGGTCCGAATCCAATGCGAGGTGGGAGGCCTCCGGGGATGCTACTTCAGCCACTTCAAGGCCCGCCGCCCCACAAC AACATAAGATCGATTAGAAGAGATTCGAGGCCGGATGATGGAGGACAAAAGGGTGCGAATGAAGAGCAGTTTGGTGGAGGGAATAGCTTCAAGAATGATG AGAGTGAGAGCGAGGATGAAGCGCCAAGGCGGTCTAGACACGGAGAGGGGAAGAAGAAGAGACGAGGCTCGGAAGGAGAAGGTGCACAAGTCTCTGATCA GTAA
AA sequence Show only first row Show all	>Lus10023254 pacid=23180955 polypeptide=Lus10023254 locus=Lus10023254.g ID=Lus10023254.BGIv1.0 annot-version=v1.0 MEDTEGVLSFDFEGGLDSGPAHPTASMPAIPADNSASASAAAVTNLSTPAAPATDPSSNYQPGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKARMPVC RFFRLYGECREQDCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKLPGPPPSVEEVLQKIQQLPSYYGQNKFFQQRGGYHQQGDRPQFPQGPNHINQAG NVRPSAAESANMQPNEQPPQQQPPQQQQLLPQQQVGQTQLQNAPNGVPNQPNRTSTPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFD SAENVILVFSVNRTRHFQGCAKMTSKIGATIGGGNWKYQHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKISRDCQELEPSVGEQLASLLYL EPDSELMAIAVAAEAKREEEKAKGLNTENENPDIVLFDDNEEEEEEESEEEEESFGQPPGPPMTMQGRGRGRGLMWPPQMPPMGRGMRPMPGLRGFPPMM IGGDGFPFGPPDGFGMPDPFAPRGFNPYGPRFNGEFPGPGAGMMFPGRPPQFPPGGFGMNMGPSRGPFMGGMGPGGPNPMRGGRPPGMLLQPLQGPPPHN NIRSIRRDSRPDDGGQKGANEEQFGGGNSFKNDESESEDEAPRRSRHGEGKKKRRGSEGEGAQVSDQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30460	C3HZnF	CPSF30, ATCPSF3...	ARABIDOPSIS THALIANA CLEAVAGE ...		Lus10023254 [exp]	0	1
AT2G18510		EMB2444	embryo defective 2444, RNA-bin...		Lus10041728 [exp]	2.8	0.9275
AT1G71800		CSTF64	cleavage stimulating factor 64...		Lus10009670 [exp]	4.5	0.9220
AT1G76160		SKS5	SKU5 similar 5 (.1)		Lus10035282 [exp]	4.9	0.9231
AT4G10760		MTA, EMB1706	EMBRYO DEFECTIVE 1706, mRNAade...		Lus10010405 [exp]	6.7	0.9068
AT4G09980		EMB1691	EMBRYO DEFECTIVE 1691, Methylt...		Lus10014971 [exp]	6.9	0.9156
AT1G14650			SWAP (Suppressor-of-White-APri...		Lus10025705 [exp]	8.5	0.9098
AT2G38730			Cyclophilin-like peptidyl-prol...		Lus10026161 [exp]	11.2	0.9145
AT5G44500			Small nuclear ribonucleoprotei...		Lus10003498 [exp]	13.0	0.9258
AT1G16610		RNPS1, SR45	arginine/serine-rich 45 (.1.2....		Lus10031212 [exp]	14.1	0.9211
AT5G59950			RNA-binding (RRM/RBD/RNP motif...		Lus10025329 [exp]	14.5	0.8932

Compare expression of checked genes

Lus10023254 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.