Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21130 481 / 3e-167 EMB2271 EMBRYO DEFECTIVE 2271, Transducin/WD40 repeat-like superfamily protein (.1) AT4G05410 460 / 2e-158 YAO YAOZHE, Transducin/WD40 repeat-like superfamily protein (.1) AT1G48630 90 / 2e-19 RACK1B_AT receptor for activated C kinase 1B (.1) AT3G18130 89 / 2e-19 RACK1C_AT receptor for activated C kinase 1C (.1) AT1G18080 82 / 9e-17 RACK1A_AT, ATARCA RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) AT2G41500 82 / 2e-16 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT5G52820 78 / 4e-15 WD-40 repeat family protein / notchless protein, putative (.1) AT1G11160 78 / 7e-15 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 74 / 2e-14 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT4G15900 73 / 1e-13 PRL1 pleiotropic regulatory locus 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008853 [exp] 611 / 0 AT1G30460 563 / 0.0 ARABIDOPSIS THALIANA CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 30, cleavage and polyadenylation specificity factor 30 (.1.2) Lus10017570 [exp] 87 / 2e-18 AT1G18080 561 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003080 [exp] 84 / 1e-17 AT1G18080 506 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) Lus10017569 [exp] 84 / 2e-17 AT1G18080 546 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) Lus10021059 [exp] 80 / 2e-15 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10039597 [exp] 79 / 2e-15 AT5G52820 792 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10004167 [exp] 79 / 2e-15 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10029493 [exp] 79 / 2e-15 AT5G52820 786 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10039636 [exp] 73 / 8e-14 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G061000 [exp] 562 / 0 AT4G21130 513 / 9e-180 EMBRYO DEFECTIVE 2271, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G107900 [exp] 548 / 0 AT4G21130 505 / 2e-176 EMBRYO DEFECTIVE 2271, Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G052700 [exp] 85 / 8e-18 AT1G18080 575 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G041600 [exp] 82 / 6e-17 AT1G18080 537 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G045800 [exp] 80 / 1e-15 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.009G058000 [exp] 76 / 1e-14 AT5G52820 811 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Potri.014G077800 [exp] 73 / 2e-13 AT5G51980 391 / 5e-132 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.007G009500 [exp] 69 / 1e-12 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 69 / 1e-12 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 67 / 7e-12 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10023255 pacid=23180966 polypeptide=Lus10023255 locus=Lus10023255.g ID=Lus10023255.BGIv1.0 annot-version=v1.0 ATGAAGCGTGGTAAAGCTCCGGCGAAGCGTGGCTCGGGAGCCACCTCCAACGGGAAAAAATCCAACGCCAATGGCGATTCCGTCTTCAAGCGGCGGAAGG CAGGCTTCCGCGACGATAACATCGAGTCAGATTCCGAGGAGGAGAACGGGTACATTGGCTCCGACGCCGGCTCCGGCGGAGACGAGGATGAAGAGATTGA TGAATTCGCCAACGAGTCCGCCGCCGAGAAGAAGCTAAGGTTAACTACTGAGGCTTTGGAAAAGGTTAATGCTATTAGTAAGAGAATCAAAGACAACAAT GACGAAGAAGAAGAAGAAGCGGAGGAAGGTGATGGAGATCCCATTGCAGCTCTCAAGTTGATGAAGGAGCAGTTGGAAGAGAGCGGCCGTTTGCGGAGAG CTCTTTCTTCAAGGGTTCAGAAGCCTGAAACTGGCGCTGGATTCCATGTCCTGGTGAAGCACACGCATCCTGTCACTGGAGTGTGTCTATCTGATGACGA TTCCAGGGGATTTTCTGTTTCTAAAGATGGATTGATCAGACATTGGGATGTAGAAAGTGGGAAAAGTGAGAAATATAAGTGGCCAACTGACAAGGTGTTG AAGTCCCATGGAGTCAAGAATCCTGAGGGTCGAGCTACCAAGCATAGTAGAAGTATTTTTGCTTTAGCTGTTAGCTCAGATGGGCGTTACTTGGCAACTG GTGGGTTTGATCGGCACATTCATTTGTGGGATACTCGAACTCGTGAACATGTTCAGGCATTCCCAGGCCACCAAGGAGCTGTGTCATGTCTAGCCTTTAG GCATGGGACTTCAGAACTCTATTCTGGTTCATATGACAGATCAGTCAAGATATGGAATATTTCAGACAGGACTTACATAAACACGTTGTTTGGCCATCAG AGTGACGTATTGTCAATCGATTGCCTGCGGAAAGAGAGGGTCTTGGCTGTTGGGCGGGATCGGACTATGCAATTCTTTAAGGTTCCTGAGGAATCCCGAG TGATATTTCGTTCGTCAACTTCAGCTCTAGAAAGCTGTTGTTTCATCGATAACGAGGACTTCTTCTCCGGCTCTGATGACGGGAGTGTCGAGCTTCGGAC TGTACAAAGGAAGAAGCCCGTGTGCATTGTTAAGAATGCTCATACATTGCCATCTGATCTCGAGAATGAAGAAAAGAACGACGGGAAGCCCTCTCCCTCT GTTGGAGCGCCTACCTGGGTAAGCTCGGTTGCTGTATGCAGAGGAAGCGACTTGGGCGCATCAGGAGCTGGCAGCGGTTTAGTGCGCTTATGGTCATTAG ATAATTCTCCAAAATCCATCAAGCCCTTGTTTGATCTCCCTCTGGTTGGCTTTGTAAACTCCATGGCTTTCGCAAAATCTGGCAAGTTCCTAGTTGCAGG TGTTGGCAAGGAACCACGACTCGGACGATGGGGAAGCATACCCTATGCTCAAAATGGAGTAGCAATTCATCAATTCCAGCTTTCGGAAGAATCGTATGAC CTATCATCCTTGAAATAG
AA sequence Show only first row Show all	>Lus10023255 pacid=23180966 polypeptide=Lus10023255 locus=Lus10023255.g ID=Lus10023255.BGIv1.0 annot-version=v1.0 MKRGKAPAKRGSGATSNGKKSNANGDSVFKRRKAGFRDDNIESDSEEENGYIGSDAGSGGDEDEEIDEFANESAAEKKLRLTTEALEKVNAISKRIKDNN DEEEEEAEEGDGDPIAALKLMKEQLEESGRLRRALSSRVQKPETGAGFHVLVKHTHPVTGVCLSDDDSRGFSVSKDGLIRHWDVESGKSEKYKWPTDKVL KSHGVKNPEGRATKHSRSIFALAVSSDGRYLATGGFDRHIHLWDTRTREHVQAFPGHQGAVSCLAFRHGTSELYSGSYDRSVKIWNISDRTYINTLFGHQ SDVLSIDCLRKERVLAVGRDRTMQFFKVPEESRVIFRSSTSALESCCFIDNEDFFSGSDDGSVELRTVQRKKPVCIVKNAHTLPSDLENEEKNDGKPSPS VGAPTWVSSVAVCRGSDLGASGAGSGLVRLWSLDNSPKSIKPLFDLPLVGFVNSMAFAKSGKFLVAGVGKEPRLGRWGSIPYAQNGVAIHQFQLSEESYD LSSLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21130		EMB2271	EMBRYO DEFECTIVE 2271, Transdu...		Lus10023255 [exp]	0	1
AT1G56110		NOP56	homolog of nucleolar protein N...		Lus10021096 [exp]	1.0	0.9637
AT1G69070			unknown protein		Lus10019174 [exp]	3.5	0.9569
AT3G66652			fip1 motif-containing protein ...		Lus10016905 [exp]	4.5	0.9550
AT3G23990		HSP60-3B, HSP60	HEAT SHOCK PROTEIN 60-3B, heat...		Lus10022832 [exp]	4.9	0.9553
AT3G03060			P-loop containing nucleoside t...		Lus10031787 [exp]	5.5	0.9523
AT3G51800		ATEBP1, ATG2, E...	A. THALIANA ERBB-3 BINDING PRO...		Lus10027818 [exp]	6.3	0.9542
AT5G14580			polyribonucleotide nucleotidyl...		Lus10008763 [exp]	6.5	0.9407
AT5G10920			L-Aspartase-like family protei...		Lus10032846 [exp]	8.4	0.9513
AT5G60990			DEA(D/H)-box RNA helicase fami...		Lus10031182 [exp]	8.7	0.9356
AT5G11880			Pyridoxal-dependent decarboxyl...		Lus10042305 [exp]	8.8	0.9419

Compare expression of checked genes

Lus10023255 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.