Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20900 317 / 5e-103 TDM1, MS5 MALE-STERILE 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G44330 290 / 2e-92 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G51280 273 / 2e-86 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48850 261 / 2e-83 ATSDI1 SULPHUR DEFICIENCY-INDUCED 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G04770 241 / 2e-75 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G22794 75 / 5e-15 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008852 [exp] 944 / 0 AT4G20900 311 / 7e-101 MALE-STERILE 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028433 [exp] 283 / 3e-89 AT3G51280 569 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10041886 [exp] 281 / 2e-88 AT3G51280 566 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10041887 [exp] 281 / 2e-88 AT3G51280 572 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028434 [exp] 280 / 2e-88 AT3G51280 560 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10011872 [exp] 253 / 2e-80 AT5G48850 392 / 2e-138 SULPHUR DEFICIENCY-INDUCED 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000753 [exp] 244 / 1e-76 AT1G04770 391 / 2e-137 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10011738 [exp] 241 / 2e-75 AT1G04770 389 / 1e-136 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022806 [exp] 252 / 1e-74 AT5G05740 644 / 0.0 ethylene-dependent gravitropism-deficient and yellow-green-like 2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G465401 [exp] 403 / 5e-133 AT4G20900 337 / 1e-108 MALE-STERILE 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G163500 [exp] 392 / 3e-129 AT4G20900 328 / 1e-105 MALE-STERILE 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G056500 [exp] 286 / 1e-90 AT3G51280 603 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G112100 [exp] 279 / 5e-88 AT3G51280 595 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G177600 [exp] 267 / 8e-86 AT1G04770 384 / 8e-135 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G240700 [exp] 266 / 4e-85 AT5G48850 404 / 9e-143 SULPHUR DEFICIENCY-INDUCED 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G050600 [exp] 252 / 4e-80 AT1G04770 381 / 6e-134 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G033201 [exp] 71 / 5e-15 AT1G04770 53 / 2e-09 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10023256 pacid=23181080 polypeptide=Lus10023256 locus=Lus10023256.g ID=Lus10023256.BGIv1.0 annot-version=v1.0 ATGCGGTTCAAAAAAGACGACGACGGTGACTACAGCAACGGCGACGAGAAAAGGGTGGTGGTGAATTGCGTACGGAAAGTTCAAGGTCGGGGGTTCTTGA CCCCGCCGCCGAGTTGGACGCCGCCGCGTTCTCGTGCTGATCACCGTCGTCGTCTTTTCCCCTTCTCTGAGAGAAAGATGGATTCCAAGTCGTCCACCGC CTCCGCCGGAGCTTACAAGACCGACCTGTTCCACGTCATCCACAAGGTCCCCGCCGGAGATTCTCCCTACGTCAAGGCCAAGCACCTGATTGAGAAAGAT CCAACCAGGGCAGTATCCATGTTCTGGGCAGCCATTAACGCAGGGGACAGAGTGGACAGTGCATTAAAAGATATGGCTGTTGTGCTAAAGCAATTGAATC GTTCTGACGAAGCCATTGAAGCCATCAAGTCGTTTCGTCATCTCTGTGTTCCAGAGTCTCAGGAATCCATTGACAACGTACTCGTTGAACTCTATAAGAG GTCTGGAAGGGTGGAAGAAGAGATAGAAATGCTTCAGAGGAAGCTGAAGAACATTGAAGAAGGAATGGTATTCGGTGGGAGGAAGACCAAAGTTGCAAGG TCTCAAGGGAAGAAGATTCAAATCACCATTGAACAAGAGAAAGCGAGGATCTTGGGGAACTTGGCTTGGGCTTACTTGCAGCAGCATAACTATGGCTTAG CTGAACAGCATTACAGGAAAGCTCTGTCATTAGAGGCTGATAAGAACAAGCAATGCAACTTGGCAGTATGTCTGATGCATATGAACAAGCTTTCAGAAGC AAGAGCTTTGCTTCAAGCAGTGAGAGCTTCATGCGGGAATAAACCGATGGATGAATCGTATGCAAAATCTTTTGAGCGGGCGTATCAGATGTTGACTGAT TCCGAGCAAGGAACTTCTTCGCAATCGAGTAATGAACCCTCTCTAGATCATGTATGGAGTGAATGTGCCTATCTTGCAAGCCCAGTTGGAAACTTTGGAG GAAATTTCAACTCAGTTAACACCATGCCCAGAAGGCAGCATCACCGGCCGATTTTTGCAGCTTCACCGATGCCTGTTCTGTTCTCGCAGCCAAGAAGGTG TGTATTCATGGCTGATGGAGGAAGTCTCAATCATTCCCCTCAATTGAGATCTCAGCCTAGATTTGCTGCTGCTGGCTCTCCTTCTGATGGAGACTGGAGG AAGCCATGGACACAAACTGCTGCTGGAAATAGTGAGATTAATACTACCAGTATAGTGGTGAAAATTCCAGTGAAGGAGACAATGGTGAGTGATAGTACAG GATCAGAAGGTGCTTTAGTTGAGAACGAGAGCAGTTCCAGCTACAATAAAAGCTGGGCGGACATGGTTGAAGAAGAGGAAGAGCTTGAAAAGCAAGTGCT AGGATGGATGATTGATGATGGGGAAAAAGTAGGAGGATCACTGGATGAGAACTGGGATTCTAACGTGGACAATGATGCAAAGAGTCCAACATCGAAATCG AAAACTGTTCGAAAGCTCTGTTTCGATGGAGGAGCTGGAGCTGGGAAGAAGATGATAAGAAATCGCCTGCAGGTATTCAAGGACATCACTCCAGCACTGT GA
AA sequence Show only first row Show all	>Lus10023256 pacid=23181080 polypeptide=Lus10023256 locus=Lus10023256.g ID=Lus10023256.BGIv1.0 annot-version=v1.0 MRFKKDDDGDYSNGDEKRVVVNCVRKVQGRGFLTPPPSWTPPRSRADHRRRLFPFSERKMDSKSSTASAGAYKTDLFHVIHKVPAGDSPYVKAKHLIEKD PTRAVSMFWAAINAGDRVDSALKDMAVVLKQLNRSDEAIEAIKSFRHLCVPESQESIDNVLVELYKRSGRVEEEIEMLQRKLKNIEEGMVFGGRKTKVAR SQGKKIQITIEQEKARILGNLAWAYLQQHNYGLAEQHYRKALSLEADKNKQCNLAVCLMHMNKLSEARALLQAVRASCGNKPMDESYAKSFERAYQMLTD SEQGTSSQSSNEPSLDHVWSECAYLASPVGNFGGNFNSVNTMPRRQHHRPIFAASPMPVLFSQPRRCVFMADGGSLNHSPQLRSQPRFAAAGSPSDGDWR KPWTQTAAGNSEINTTSIVVKIPVKETMVSDSTGSEGALVENESSSSYNKSWADMVEEEEELEKQVLGWMIDDGEKVGGSLDENWDSNVDNDAKSPTSKS KTVRKLCFDGGAGAGKKMIRNRLQVFKDITPAL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20900		TDM1, MS5	MALE-STERILE 5, Tetratricopept...		Lus10023256 [exp]	0	1
AT3G50310		MKKK20, MAPKKK2...	MAPKK kinase 20, mitogen-activ...		Lus10034288 [exp]	6.9	0.7960
AT5G38300			unknown protein		Lus10033566 [exp]	19.1	0.7523
AT1G45207			Remorin family protein (.2)		Lus10009750 [exp]	19.4	0.7587
AT5G58610			PHD finger transcription facto...		Lus10015266 [exp]	31.7	0.7337
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10034793 [exp]	39.3	0.6912
AT2G33793			unknown protein		Lus10018490 [exp]	40.0	0.6657
AT3G15390		SDE5	silencing defective 5 (.1.2)		Lus10025646 [exp]	44.2	0.7265
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Lus10018698 [exp]	48.7	0.7410
AT2G46980			unknown protein		Lus10009259 [exp]	51.2	0.7264
AT5G60910	MADS	FUL, AGL8	FRUITFULL, AGAMOUS-like 8 (.1....		Lus10021140 [exp]	51.4	0.7052

Compare expression of checked genes

Lus10023256 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.