Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20910 733 / 0 CRM2, HEN1 HUA ENHANCER 1, CORYMBOSA 2, double-stranded RNA binding protein-related / DsRBD protein-related (.1.2) AT4G20920 494 / 3e-162 double-stranded RNA-binding domain (DsRBD)-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038546 [exp] 1703 / 0 AT4G20910 806 / 0.0 HUA ENHANCER 1, CORYMBOSA 2, double-stranded RNA binding protein-related / DsRBD protein-related (.1.2) Lus10006035 [exp] 98 / 4e-22 AT1G76480 147 / 1e-43 unknown protein Lus10000530 [exp] 98 / 8e-20 AT5G22450 71 / 3e-14 unknown protein Lus10008393 [exp] 75 / 1e-14 AT3G52280 139 / 3e-39 general transcription factor group E6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G465500 [exp] 1065 / 0 AT4G20910 857 / 0.0 HUA ENHANCER 1, CORYMBOSA 2, double-stranded RNA binding protein-related / DsRBD protein-related (.1.2) Potri.011G163600 [exp] 1050 / 0 AT4G20910 776 / 0.0 HUA ENHANCER 1, CORYMBOSA 2, double-stranded RNA binding protein-related / DsRBD protein-related (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0196 [flax] [poplar] DSRM PF00035 [flax] [poplar] dsrm Double-stranded RNA binding motif
Representative CDS sequence Show only first row Show all	>Lus10023257 pacid=23181045 polypeptide=Lus10023257 locus=Lus10023257.g ID=Lus10023257.BGIv1.0 annot-version=v1.0 ATGGAAGCGCAAGGATCAGTAACTGTCACGGCGAGGAAGACGAATCTTACGCCGAAGGCAATCATCCATCAGAAGTTCGGAAGCAAGGCGTGTTATACGG TGGAGGAAGTTCAAGAGTCTGCTCATAGTGAATTGCCTGGTTTGTCGATCCCTCAGAAGGGTCCGTGTCTTTATCGCTGCAGATTAGAGCTCCCTGAAAT TTCTGTTGTATCCGATACTTGCAAAAAGAAGAAGGATGCCGAGCGGTCTGCTGCTGAGATGGCTTTGAAGAAGCTAGGCATCGATTCTACAGTTGATGAT CCAACTGCCTTGGATTTATGGGATATCTTAGTTGAAAGGATCAAGTACTTGTTTTCAGATGAGTTCCTTTCGTCTTTGCATCCATTGTCTGGTCATCTTA AAGGAGCTTTCTGCAGAGATGGTGATCTATGTGGTTCAGTGCCCTGTTCAGTTTTTGCTGTCTCTGATACAAAGTTGAGCAATTTATGTAAATCACTGGA CCCCAATGTGGATTTGAATCCTTTCCTGGCGCTTCCGATCATTAGAATTGCTGCAGCAAGGTTACCCTCTGTTGTGGTTTCGGAGAAAAGGTATTCAATT CAGAGACTGAGGCCCTACTCTCCTGAGATATTGAAATCTTCTACCATCCAGCATCCTGGTTGTGCTGAAGCTATATTGGTTGATGCTATATATGTACCGT CTTCGTTGGATAAGAACGTTCGACCGGTGACTCTTGATTTGTCTTCAGCTGGTTATTACATGGATGTTATTGCACAGAATCTTGGTGTTCATGATGCTGG TAGGGTTCTGTTGTCCAGGACAGTTGGTAAAGCTTCTTCAGAGACAAGATTATATCACGCTGCCCCTGAATCACTTCTGGTCGAACTGTCGCCAGATCGT CTACCTGTAAAAGATGTCCACCTAGAAGGATCACATAATGCAAGAGCTAGCTACTTTTGTGGCCAAGTCATACATGGAGATGCTATCATGGCTTCCATTG GGTACACCTGGAGGTCCAGAGACCTTTTTCATGAGAATTTAACCATTCAAGCGTATCACAGGATACTACTTAGCACATTTCCAAGTGGAACTTACAAGTT GTCAAGAGAAGCAGTGCTTGCCGCTGAATTGCCTTCACGGTTTACAACAAAAGCTTACTGGAGAGGTACATTCCCGAAAGAAGTTCTCTGTACATTCTGC CGGCTGCACCGACTGTCTGAACCTGTATTCTCTATTATAAGCACGCCTTCGGCAGAATCCGGTTTATCCAGATTGCACAAAAAGGTGAAACTCAAAGAGA CAACCATACCACCAACTGGGAATTCGAATGAGATACCTGCTGGTACTGGGGATACAGAGTCAGCTGATTCTGGTAGCACTTTCAGATGTGAAATAAAGAT ATACTCCAAGCTTCAGGATTTGCTCGTGGAATGCTCGCCCACTGAGATATATAAGAAGCAGAGTGATTCTGTTCACAATGCTTCTTTGAAGGTTCTGTCA TGGTTGAGTACGTATTTTAACAACGTAGGCATGCCCTTAGAAAGGCTGACCTCGTATGCAGAAAACCTTGCTATCAAGTTTTATCCTGAAACATTCTACA AAGAGTTTGTTCTTTATCCATATATCGAGAATACCGTCAGGAGGAATGGAGAACAAAAGCTACTAGATGAAAAAGCTGCAGATCTTTCATGTTCTTTGTC TGAGCATGGTGTGATGTCCTTAATGGTAGAAGGTTGTGATTCTGGTGCCTGTCCAGCTAATGGATCCCTGTTATGTATATCCTATTCTGTTTTTCTAGCA ATTGAAGACGAAGAAACCAAAGAGCTTCTCGAAAGAAAGGATGAGTTTGAGTTCGAGATAGGTACTGGAGCAGTCGTTTCTCCTCTAGAGGCTGTTGTGA CACAGATGTCAGTTGGTCAGTCTGCTCTCTTCCATACGAGGTTACCCCCTGAATATTCTATATTAGCTGCGGGAAATGATTCCGGAAGGGTTCTCTCCCT AATATCTTTATTTAGTTGCTACTTGCAATTCTCTGTGACATTGCTGCATGTAACTGAACCTCCAGAAGAAAGAATGGAGCAGGCTCTTTTCAGTCCTCCA CTTTCAAAACAAAGGGTGGAATTTGCCGTCCAGCATATCAGAAATTCTTCTGCTTTATCCCTAGTTGACTTTGGGTGTGGATCGGGAAGCTTGTTGGATT CTCTATTGGATTATCCAATCTCTCTGGAAACAATTGTTGGTGTCGACATATCGGTGAAAGGTCTAACTCGTGCTGCAAAGATACTTAATTCGAAGCTCGC TGCAAAGACTGACATTGCTGTCAAATCTGCAATTCTATATGACGGTTCCATCACTGTTTATGATTCTCGGCTGCATGGAGTTGATATCGGCACTTGCTTG GAGGTGATTGAGCATATGGAGGAAGAGGAAGCGACCCAGTTCGGAGACGTGGTACTGAGCCATTTCCGTCCGAGGATCCTCATCGTCTCCACTCCGAACT ACGAATACAACGTGATCCTTCAAAGATCCGGAAGCCAAGACGAAGACCCTGACGAGAAATCCCAGTCGCACTCCATCAAGTTCCGGAACCTGGACCACAA GTTCGAGTGGACTAGACAGCAGTTCGGTGAATGGGCATGCCGGTTGGGAGAGAAACACAGCTACGACGTTGAGTTTGGAGGCGTTGGTGGCACTGCCGGT GTCGAACCGGGGTTCGCTTCTCAGATTGCTGTTTTCAAGAGGAAGCTTGTTGAGGAAGGGACTTGTGGAGATGATGGCATTTTCGAAACCGACGAGTGTT TGGAAGAACCGTACAATGTTATATGGGAGTGGAAGAGTTCGGTGCAGTAG
AA sequence Show only first row Show all	>Lus10023257 pacid=23181045 polypeptide=Lus10023257 locus=Lus10023257.g ID=Lus10023257.BGIv1.0 annot-version=v1.0 MEAQGSVTVTARKTNLTPKAIIHQKFGSKACYTVEEVQESAHSELPGLSIPQKGPCLYRCRLELPEISVVSDTCKKKKDAERSAAEMALKKLGIDSTVDD PTALDLWDILVERIKYLFSDEFLSSLHPLSGHLKGAFCRDGDLCGSVPCSVFAVSDTKLSNLCKSLDPNVDLNPFLALPIIRIAAARLPSVVVSEKRYSI QRLRPYSPEILKSSTIQHPGCAEAILVDAIYVPSSLDKNVRPVTLDLSSAGYYMDVIAQNLGVHDAGRVLLSRTVGKASSETRLYHAAPESLLVELSPDR LPVKDVHLEGSHNARASYFCGQVIHGDAIMASIGYTWRSRDLFHENLTIQAYHRILLSTFPSGTYKLSREAVLAAELPSRFTTKAYWRGTFPKEVLCTFC RLHRLSEPVFSIISTPSAESGLSRLHKKVKLKETTIPPTGNSNEIPAGTGDTESADSGSTFRCEIKIYSKLQDLLVECSPTEIYKKQSDSVHNASLKVLS WLSTYFNNVGMPLERLTSYAENLAIKFYPETFYKEFVLYPYIENTVRRNGEQKLLDEKAADLSCSLSEHGVMSLMVEGCDSGACPANGSLLCISYSVFLA IEDEETKELLERKDEFEFEIGTGAVVSPLEAVVTQMSVGQSALFHTRLPPEYSILAAGNDSGRVLSLISLFSCYLQFSVTLLHVTEPPEERMEQALFSPP LSKQRVEFAVQHIRNSSALSLVDFGCGSGSLLDSLLDYPISLETIVGVDISVKGLTRAAKILNSKLAAKTDIAVKSAILYDGSITVYDSRLHGVDIGTCL EVIEHMEEEEATQFGDVVLSHFRPRILIVSTPNYEYNVILQRSGSQDEDPDEKSQSHSIKFRNLDHKFEWTRQQFGEWACRLGEKHSYDVEFGGVGGTAG VEPGFASQIAVFKRKLVEEGTCGDDGIFETDECLEEPYNVIWEWKSSVQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20910		CRM2, HEN1	HUA ENHANCER 1, CORYMBOSA 2, d...		Lus10023257 [exp]	0	1
AT1G17690		NOF1	nucleolar factor 1, unknown pr...		Lus10014835 [exp]	2.4	0.9024
AT3G04240		SEC	secret agent, Tetratricopeptid...		Lus10003576 [exp]	3.5	0.8915
AT3G43920		DCL3, ATDCL3	dicer-like 3 (.1.2.3)		Lus10019757 [exp]	3.6	0.9231
AT1G18450		ATARP4	actin-related protein 4 (.1)		Lus10042980 [exp]	5.2	0.8993
AT5G67610			Uncharacterized conserved prot...		Lus10019263 [exp]	5.3	0.8990
AT1G18450		ATARP4	actin-related protein 4 (.1)		Lus10032484 [exp]	7.4	0.8923
AT2G24120		PDE319, SCA3	SCABRA 3, PIGMENT DEFECTIVE 31...		Lus10034355 [exp]	12.2	0.8728
AT3G20050		ATTCP-1	T-complex protein 1 alpha subu...		Lus10037214 [exp]	13.8	0.8129
AT3G43920		DCL3, ATDCL3	dicer-like 3 (.1.2.3)		Lus10016367 [exp]	19.2	0.8819
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Lus10027350 [exp]	21.0	0.8901

Compare expression of checked genes

Lus10023257 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.