Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20930 478 / 1e-170 6-phosphogluconate dehydrogenase family protein (.1) AT1G17650 131 / 5e-35 GR2, GLYR2 glyoxylate reductase 2 (.1) AT4G29120 112 / 3e-28 6-phosphogluconate dehydrogenase family protein (.1) AT3G25530 103 / 2e-25 GR1, GLYR1, GHBDH, ATGHBDH glyoxylate reductase 1 (.1.2) AT1G18270 105 / 2e-24 ketose-bisphosphate aldolase class-II family protein (.1.2.3) AT1G71180 82 / 2e-17 6-phosphogluconate dehydrogenase family protein (.1) AT1G71170 79 / 1e-16 6-phosphogluconate dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038545 [exp] 583 / 0 AT4G20930 451 / 3e-160 6-phosphogluconate dehydrogenase family protein (.1) Lus10037629 [exp] 125 / 4e-33 AT1G17650 486 / 9e-174 glyoxylate reductase 2 (.1) Lus10015612 [exp] 127 / 3e-32 AT1G17650 495 / 4e-172 glyoxylate reductase 2 (.1) Lus10002140 [exp] 107 / 2e-25 AT1G18270 1147 / 0.0 ketose-bisphosphate aldolase class-II family protein (.1.2.3) Lus10001349 [exp] 102 / 1e-24 AT1G71180 335 / 4e-115 6-phosphogluconate dehydrogenase family protein (.1) Lus10012950 [exp] 89 / 4e-20 AT4G29120 456 / 3e-163 6-phosphogluconate dehydrogenase family protein (.1) Lus10016077 [exp] 89 / 3e-19 AT3G57220 611 / 0.0 Glycosyl transferase family 4 protein (.1) Lus10012301 [exp] 87 / 3e-19 AT3G25530 434 / 3e-155 glyoxylate reductase 1 (.1.2) Lus10008753 [exp] 71 / 4e-13 AT1G18270 853 / 0.0 ketose-bisphosphate aldolase class-II family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G465600 [exp] 502 / 4e-180 AT4G20930 507 / 0.0 6-phosphogluconate dehydrogenase family protein (.1) Potri.003G040800 [exp] 121 / 2e-31 AT1G17650 508 / 0.0 glyoxylate reductase 2 (.1) Potri.014G197900 [exp] 111 / 3e-28 AT3G25530 463 / 1e-166 glyoxylate reductase 1 (.1.2) Potri.018G088000 [exp] 100 / 6e-24 AT4G29120 463 / 8e-165 6-phosphogluconate dehydrogenase family protein (.1) Potri.001G211500 [exp] 98 / 3e-23 AT1G71180 310 / 2e-105 6-phosphogluconate dehydrogenase family protein (.1) Potri.015G037000 [exp] 100 / 7e-23 AT1G18270 1931 / 0.0 ketose-bisphosphate aldolase class-II family protein (.1.2.3) Potri.003G038450 [exp] 54 / 8e-09 AT1G17650 217 / 8e-71 glyoxylate reductase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03446 [flax] [poplar] NAD_binding_2 NAD binding domain of 6-phosphogluconate dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10023258 pacid=23180983 polypeptide=Lus10023258 locus=Lus10023258.g ID=Lus10023258.BGIv1.0 annot-version=v1.0 ATGGCTATCTCTACAATCAGAGGTAAAGCCGGAGCCTTTCTTGGTTTGTTCCACCGCTATCCAGTGCGCCCCTTCTCTTCTTCTTCAGCCATCTCCTCTG AATTCAAGAATGTTGGATTCATAGGACTGGGAAACATGGGGTTCCGGATGGCTAATAACTTGATCAGAGCTGGCTACAACTTAGCTGTTCACGACATTAA CCATGGTGTCATGAAGAAGTTTTCTGACATGGGAATTCCGGCTAAAGGCACTCCATCTGATGTTGCTGAATCAAGTGACGTTGTGATCACAATGTTGCCT TCATCCTCTCATGTAGTGGACGTGTACACTGGACCAAACGGATTGCTTTGCGATGGAAGCGCACTGAGACCTTGGTTGTTTATTGATTCATCTACGATTG ATCCCCAAACGTCAAGAAAGGTTTCGGCTGCTGTGTCCGAGTGTACTTTGAAGGAAGATAGAGGAAATGATTGGAAGAAACCTGTAATGTTGGACGCTCC AGTTTCTGGAGGTGTTATTGCTGCAGAAGCTGGTGTGCTTTGTTTCATGGTGGGTGGTTCCCAGGAAGCCTATCTGGCTGCCAAACCCATATTTGACTCA ATGGGCAAAAACACAATCTACTGCGGTGGAGCAGGAACTGGTGCATCAGCAAAGCTGTGCAACAATTTGGCAATGGCGGTTAGTATGCTCGGTGTATCGG AAGCCCTTGCTCTCGGTCAGTCGCTTGGGATCGATGCAAGCACTCTCACCAAGGTTTTCAACTCTTCAAGCGCTCGATGCTGGAGTAGCGATACTTATAA CCCGGTTCCAGGAGTGATGGAAGGGGTACCTTCTTCGAGAAACTATGCTGGAGGATTCGCCTCCAAGCTCATGGCGAAAGACTTGAACCTTGCTGCTGCA TCGGCCAAAGCAGTCGATCTGGAATGCCCTTTGACATCTCAAGCTAAAGAGATATACGAGAGACTGTGCACGGATGGCCATGAGAATGAGGACTTCTCAT GCGTTTTTCGCCACTTCTACTCTGGACAAGATGAGCATTAG
AA sequence Show only first row Show all	>Lus10023258 pacid=23180983 polypeptide=Lus10023258 locus=Lus10023258.g ID=Lus10023258.BGIv1.0 annot-version=v1.0 MAISTIRGKAGAFLGLFHRYPVRPFSSSSAISSEFKNVGFIGLGNMGFRMANNLIRAGYNLAVHDINHGVMKKFSDMGIPAKGTPSDVAESSDVVITMLP SSSHVVDVYTGPNGLLCDGSALRPWLFIDSSTIDPQTSRKVSAAVSECTLKEDRGNDWKKPVMLDAPVSGGVIAAEAGVLCFMVGGSQEAYLAAKPIFDS MGKNTIYCGGAGTGASAKLCNNLAMAVSMLGVSEALALGQSLGIDASTLTKVFNSSSARCWSSDTYNPVPGVMEGVPSSRNYAGGFASKLMAKDLNLAAA SAKAVDLECPLTSQAKEIYERLCTDGHENEDFSCVFRHFYSGQDEH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20930			6-phosphogluconate dehydrogena...		Lus10023258 [exp]	0	1
AT4G29890			choline monooxygenase, putativ...		Lus10032689 [exp]	3.5	0.9523
AT1G13580		LOH3, LAG13	LAG One Homologue 3, LAG1 long...		Lus10030571 [exp]	6.0	0.9433
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039478 [exp]	6.4	0.9606
AT3G49180		RID3	ROOT INITIATION DEFECTIVE 3, T...		Lus10016759 [exp]	6.9	0.9492
AT3G30380			alpha/beta-Hydrolases superfam...		Lus10031953 [exp]	7.0	0.9343
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10036817 [exp]	9.0	0.9489
AT1G56140			Leucine-rich repeat transmembr...		Lus10031401 [exp]	9.2	0.9537
AT2G23450			Protein kinase superfamily pro...		Lus10011652 [exp]	14.1	0.9527
AT2G46680	HD	ATHB7, ATHB-7	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10008840 [exp]	14.1	0.9505
AT3G47250			Plant protein of unknown funct...		Lus10020563 [exp]	14.2	0.9492

Compare expression of checked genes

Lus10023258 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.